Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0561 ATGGGTACTCTTGGTAACACGGAAGTTTACAATCACAACCATGAAGATAATGATCCTGAAGAGTATCTTCATGGGGTGAATTTCTCGATCCAGAGAGGATTCAAGGAGAAACTGAAGGCGAGTTTGAAGGAAGCTTTGTTTCCTGATGATCCCTTCAGGCAGTTCAAGAACGAGGAGAAAAAGACGAGGAGGGTGCTCAAGGGGGTGCAATACTTCATCCCTATCTTTGAGTGGCTACCCACGTATAATTGGCGTCTCTTTTGCTCTGACTTGATCGCAGGTTTAACCATATCAAGCCTTGCCATCCCTCAAGGCATTAGCTATGCCAAACTTGCAGACCTTCCTCCTCTCATTGGCCTTTATTCGAGCTTTGTCCCACCTCTGGTGTATGCTATTTTTGGGAGTTCAAGGCACATGGCTGTGGGGACGATAGCAGCAGCATCATTGCTTATTGGTCAAACCATACAAAAGGTGGCAGACCCAAACGAGGACCCAACCTTGTATCTTCATTTGATATTCACAACCACCTTTGTCACTGGTGTTTTCCAAGCTGCTTTGGGATTTTTCAGGCTGGGGATATTGGTGGACTTTTTCTCTCATTCTACCATCAATGGCTTCATGGGAGGGACAGCAGTGATTCTCATCCTCCAACAGCTAAAGGGCGTGTTTGGAATGATACATTTTTCACAGAAAACCAACTTGGTGGCGGTGATAAAGAGCATCGTTAACAATAGACACGAGATTAGGTGGGAACCTACAGTTCTTGGAGTGGTCTTGCTTGCTTTCTTGCAATTTACCAGGCACTTGAGGAACAAGAATCCAAAACTGTTTTGGGTACAGGCTATAGGTCCAATGGTGACTGTAGTAGTTGCTGGTGTTTTCACCTACCTCGTCAAGGGCCAAAAACATGGAATTCAAATTGTGGGGCATCTAGACAAAGGATTAAATCCATTGTCCATCCACTACATGAACTTTAATGGTAAATACTTATCAGCAGTTCTGCAAGCTGGAATTATCACAGGGGTGTTATCATTAGCAGAAGGAATAGCAATAGGAAGAAGCTTTGCTGTTGCTGATAACACACCTCATGATGGGAACAAAGAAATGATCGCTTTTGGCCTCATGAACTTGTTCGGATCTTTTACTTCATGCTATTTGACTAGTGGACCATTTTCGAAGACTGCAGTGAATTACAATGCAGGGTGTAAGACTGCAATGGCAAATGTGGTACAGGCAGTGATAATGGCACTGACACTGCAATTTTTGGCACCATTATTTGGCTACACCCCTATGGTTGCTCTCTCAGTCATTATCATATCTGCCATGCTTGGACTCATTCATTACGAAGAAGTCGTTCATCTCTTCAAAGTTGACAAATTTGATTTTGTCATTTGCATGGCTGCTTTCCTCGGAGTTATCCTCATAAGCATGGATGTTGGTCTCATGATTTCTGTTGGACTAGGGGTTTTGAGAGCACTGTTATATGTGGCTAGACCAGCGCCATGCAAGCTTGGAAAGTTAGCTGAAGTTGGTTTATACAGAGACACAGAACAATATAAAGTTTCAACATTCGCTGGGGTTCTTATTATTCAACTTGGCTCTCCCGTTTACTTTGCAAATTCTAATTACGTCAAAGAAAGGATTATGAGGTATATTCGAAGTGAACAAGCTTCTACCGGAGAGAATGTTGAACACATCGTACTTGATTTGTCAGGAGTAACATCCATTGACACAACTGCTATCAAAGCATTGGATGAGCTAGTTAAAGTGTTGACAAAGAATGCAATTAAGATTTTGTTCGTAAATCCGAGGGTGGAGGTGTTGGAGAAGCTTATGTTATCAAAGTTTGTTGACAAAATTGGGAAAGAAGCGTTCTATCTAACATTGGATGAGGCAGTGATGGCAAGTCAATATTCACTTCGTTCATCAAAGGAAAATCATGGCGAAGGTGGCATGGTTTAA 1962 0.4246 MGTLGNTEVYNHNHEDNDPEEYLHGVNFSIQRGFKEKLKASLKEALFPDDPFRQFKNEEKKTRRVLKGVQYFIPIFEWLPTYNWRLFCSDLIAGLTISSLAIPQGISYAKLADLPPLIGLYSSFVPPLVYAIFGSSRHMAVGTIAAASLLIGQTIQKVADPNEDPTLYLHLIFTTTFVTGVFQAALGFFRLGILVDFFSHSTINGFMGGTAVILILQQLKGVFGMIHFSQKTNLVAVIKSIVNNRHEIRWEPTVLGVVLLAFLQFTRHLRNKNPKLFWVQAIGPMVTVVVAGVFTYLVKGQKHGIQIVGHLDKGLNPLSIHYMNFNGKYLSAVLQAGIITGVLSLAEGIAIGRSFAVADNTPHDGNKEMIAFGLMNLFGSFTSCYLTSGPFSKTAVNYNAGCKTAMANVVQAVIMALTLQFLAPLFGYTPMVALSVIIISAMLGLIHYEEVVHLFKVDKFDFVICMAAFLGVILISMDVGLMISVGLGVLRALLYVARPAPCKLGKLAEVGLYRDTEQYKVSTFAGVLIIQLGSPVYFANSNYVKERIMRYIRSEQASTGENVEHIVLDLSGVTSIDTTAIKALDELVKVLTKNAIKILFVNPRVEVLEKLMLSKFVDKIGKEAFYLTLDEAVMASQYSLRSSKENHGEGGMV* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0561 653 ProSitePatterns SLC26A transporters signature. 116 137 IPR018045 GO:0008271|GO:0008272
Vra1g0561 653 ProSiteProfiles STAS domain profile. 517 636 IPR002645 -
Vra1g0561 653 Pfam STAS domain 523 632 IPR002645 -
Vra1g0561 653 PANTHER SULFATE TRANSPORTER 20 646 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vra1g0561 653 SUPERFAMILY SpoIIaa-like 518 633 IPR036513 -
Vra1g0561 653 TIGRFAM sulP: sulfate permease 74 632 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vra1g0561 653 Gene3D STAS domain 499 639 IPR036513 -
Vra1g0561 653 PANTHER SULFATE TRANSPORTER 3.5-RELATED 20 646 IPR030316 GO:1902358
Vra1g0561 653 Pfam Sulfate permease family 87 468 IPR011547 GO:0016021
Vra1g0561 653 CDD STAS_SulP_like_sulfate_transporter 526 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0561 Vra-Chr1 6568744 6573609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0561 24 644 Inorganic Solute Cotransporters AT5G19600 61.093 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0561 K17471 - gmx:100789107 1054.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0561 1 6568744 6573609 Vra1g0561 1 6568744 6573609 ECH