Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0559 ATGGACGACATGGAAGACGACGCAAGGTACCCCCCTAAGTCATTCTCCCTCAACCGTCAGAATCCCTCCCATCGACATAAACACCCCGCACGCGCCGCCCCTTACCACCGTCCAATGCCCACGCGCTACGACCAGCCCATGGTGGAAGACGACGATGAAGATGATGAAAACGAACACGAAGATTTCAACGACGACAACGACGAAGGCGAAAACGGATACGATGAAAACGATATCGTGGGGTATCCCCGGATCCCGAAGAAGCGCAAGGTGGTAGTCGCGCCAGGATCCTACGAATTCGCGCCACGTTTCAAATTGTCGTACGGTTCGCGTGGTTCGGGTTCTTCTGGTGAAGAGTGGAGCGAACACGAGACTTTCGTGCTGTTGGAGGTGTGGGGGGACAAGTTCCTCCAGCTCGGGAGGAACAGTTTAAGGTCCGAGGAATGGCACGAGGTTGCCGAAAAGGTTTCGGAGGAATTGAAGGCAGAGAGAAGCGTGACGCAGTGTAGGAGCGTGCTGGACAAGCTGAAGAGAAAGTACAAGAAGGAGAAAACCAAAATGGATGAAATGGGGATGGGCTCTTGCAAATGGCCCTACTTCAAGAAGATGGACATGTTGATGGCATCGTCGGCAAGGCAAGAGTATGGCCTTGCATGTGGGGTGGATTCTGGGGAGTATGTGTTTATGAACACTAGGGTTTACTTGAACAGGTCCAATGGATTTGATGAGATGAGGGATAGTCCAGGGGAGTCTGAGAGTGATGATGATGAGGAAGAAGAGGAGTTTGGTGGTGGCGGTGCTGCTGATGAGGAGGATGAGACATCGTTCCGTGTGTTGGCGGATTCGATTCAGAAGTTTGGGAAGATTTATGAGAAGATTGAGAACAGCAAGAGGCAGCAGATGATGGAGTTGGAGAAGATGAGGCTGGATTTTAACAGGGAGTTGGAGCTGCAGAAGAAGCAGATTCTCGAGAGGGCGCAGGCTGAGATTGCCAAAATTCAGGAAGGGGATGAGGAGGATACCGACACTTCCACGGAGAATCTCAGTGAATGA 1050 0.5171 MDDMEDDARYPPKSFSLNRQNPSHRHKHPARAAPYHRPMPTRYDQPMVEDDDEDDENEHEDFNDDNDEGENGYDENDIVGYPRIPKKRKVVVAPGSYEFAPRFKLSYGSRGSGSSGEEWSEHETFVLLEVWGDKFLQLGRNSLRSEEWHEVAEKVSEELKAERSVTQCRSVLDKLKRKYKKEKTKMDEMGMGSCKWPYFKKMDMLMASSARQEYGLACGVDSGEYVFMNTRVYLNRSNGFDEMRDSPGESESDDDEEEEEFGGGGAADEEDETSFRVLADSIQKFGKIYEKIENSKRQQMMELEKMRLDFNRELELQKKQILERAQAEIAKIQEGDEEDTDTSTENLSE* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0559 349 MobiDBLite consensus disorder prediction 330 349 - -
Vra1g0559 349 Gene3D - 119 181 - -
Vra1g0559 349 PANTHER ALCOHOL DEHYDROGENASE TRANSCRIPTION FACTOR MYB/SANT-LIKE FAMILY PROTEIN 41 344 - -
Vra1g0559 349 Pfam Myb/SANT-like DNA-binding domain 118 204 IPR044822 -
Vra1g0559 349 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 41 344 IPR044823 -
Vra1g0559 349 MobiDBLite consensus disorder prediction 238 273 - -
Vra1g0559 349 Coils Coil 289 331 - -
Vra1g0559 349 MobiDBLite consensus disorder prediction 1 80 - -
Vra1g0559 349 MobiDBLite consensus disorder prediction 247 267 - -
Vra1g0559 349 MobiDBLite consensus disorder prediction 47 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0559 Vra-Chr1 6532218 6542497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0559 119 338 Trihelix Transcription Factor Family AT1G54060 30.996 1.59e-19 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra1g0559 Myb_DNA-bind_4 9.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0559 - - gmx:100790166 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0559 1 6532218 6542497 Vra1g0559 1 6532218 6542497 ECH