Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0556 ATGCCGAGTCGATCAACGGGAGTCATAACGCAAGACTGGGACCCCATCGTTTTGCACAAGGCCAAGCCCAAGGCGCAGGACCTGCGCAACCCCAAGGCCGTGAACCAGGCGCTCCGATCCGGCGCGGAGGTGCTTACTGTGAAGAAGTTCGACGCCGGTTCGAACCGGAAGGCTGGCGGTCCGGCTGTGAACCCGAGGAAGCTGGAGGAGGGGACGGAGCCAGCAGCGCTGGAGCGCGTAGCGGGGGAGGTCCGGCACGCGATCCAGAAGGCGCGTTTGGAGAAGAAGATGAGCCAGGCGGAGCTGGCGAAGCAGATCAACGAGCGGACGCAGGTGGTGCAGGAGTACGAAAATGGCAAGGCAGTGCCTAACCAGGCCGTGCTGGCCAAGATGGAGAGGGTTCTCGGTGTCAAGCTCAGGGGCAAAATCGGAAAGTGA 438 0.6256 MPSRSTGVITQDWDPIVLHKAKPKAQDLRNPKAVNQALRSGAEVLTVKKFDAGSNRKAGGPAVNPRKLEEGTEPAALERVAGEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGKAVPNQAVLAKMERVLGVKLRGKIGK* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0556 145 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 144 - -
Vra1g0556 145 CDD HTH_XRE 87 139 IPR001387 -
Vra1g0556 145 Pfam Helix-turn-helix 88 139 IPR001387 -
Vra1g0556 145 Coils Coil 88 110 - -
Vra1g0556 145 Gene3D - 71 145 IPR010982 GO:0003677
Vra1g0556 145 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1C 1 144 - -
Vra1g0556 145 SUPERFAMILY lambda repressor-like DNA-binding domains 85 139 IPR010982 GO:0003677
Vra1g0556 145 Pfam Multiprotein bridging factor 1 11 80 IPR013729 -
Vra1g0556 145 ProSiteProfiles Cro/C1-type HTH domain profile. 88 142 IPR001387 -
Vra1g0556 145 SMART mbf_short4 87 142 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0556 Vra-Chr1 6512801 6513667 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Vra1g0556 MBF1 7.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0556 K03627 - twl:119996545 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0556 1 6512801 6513667 Vra1g0556 1 6512801 6513667 ECH