Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0555 ATGGCTGCTCTCTCTAATGGCAACCAGGCTTCTTCTTTCAAAATTCCTCCCATCAAGTTCACCAAACTCTTCATCAATGGACAATTTGTTGATTCCCTTTCAGGAGAAGAGTTTGAGACAATAGACCCAAGTACAGGGGAATTGATTACGAAGATCGCAGAGGGAAGAAAAGAAGACGTTGATGTTGCTGTGAAAGCGGCACGTGTCGCTTTCGACCATGGTCCATGGCCTCGTATGCCCGGTGTGGAAAGAGCAAGAATTATGATGAAATGGGCAGACTTAATTTTGCAAAACATAGATGAACTAGCAGCATTGGAGGCCATCGATGCTGGGAAGTTGTACCACTTTTGTAAGGTTGCTGACATTCCTGCAGCAGCAGCTACTATACGTTATTATGCTGGTGCAGCAGATAAAATCCACGGGGAGGTCTTGAAAGCTTCTGGGGAGTTTCATGCATATACTTTACTAGAACCAATTGGTGTTGTGGGACACATCATTCCCTGGAACTTCCCTACCACCATGTTTTTTGTCAAGGTTAGTCCTTCCTTGGCTGCCGGTTGCACAATGATCCTCAAGCCTGCTGAACAAACACCTCTCACAGCCTTGTATTATGCTCATCTAGCTAAACTGGCTGGAATTCCAGATGGAGTACTTAATGTAGTACCTGGATTTGGTCCAACTGCAGGTGCTGCAATAAGCTCACACATGGACATTGATATGGTAAGTTTCACAGGTTCAACAGAAGTGGGGCGTGAAATAATGCGTGCTGCAGCTAGCAGTAATTTGAAACCAGTTTCACTTGAATTAGGAGGCAAGTCACCCGTCATAATTTTTGATGATGCTGATGTAAATAAAGCTGCCGAGCTTGCCCTCTTGGGCATCGTATTCAATAAGGGAGAAATCTGTGTTGCAGGTTCTCGTGTGCTCGTCCAAGAAGGAATTTATGATGAATTTGAGAAGAAATTGGTGGAGAAAGCAAAAGCCTGGGTGGTTGGTGATCCTTTTGATCCTAAAGTTCAACAAGGGCCTCAGGTTGACAAGAAGCAATTTGAAAAGATCCTTTCCTATATTGAGATTGGAAAGAAAGAAGGGGCCACCCTTTTAACAGGCGGAAAAAGAGTGGGAAACAAGGGTTACTACATTGAACCTACAATTTTCTCCAATGTTAAGGATGACATGCGTATAGTACAGGAGGAGATATTTGGTCCTGTGATGGCCTTGAGGAAGTTTAAGACTATTGAGGATGCAATTAAGATTGCCAACAGTACTAAGTATGGTCTAGCATCAGGCATTGTGACCAAGAGTTTGGACACAGCCAACACTGTGTCAAGGTCCATTCGTGCAGGCATTGTTTGGATCAATTGCTACTTTATCTTCGGGAATGACATTCCTTACGGAGGGTACAAAATGAGTGGATTTGGAAGAGATTTTGGATTGGAAGCTCTACACAAGTATCTACAAGTTAAATCTGTTGTAACTCCCATTTACAACTCTCCTTGGCTTTGA 1506 0.4343 MAALSNGNQASSFKIPPIKFTKLFINGQFVDSLSGEEFETIDPSTGELITKIAEGRKEDVDVAVKAARVAFDHGPWPRMPGVERARIMMKWADLILQNIDELAALEAIDAGKLYHFCKVADIPAAAATIRYYAGAADKIHGEVLKASGEFHAYTLLEPIGVVGHIIPWNFPTTMFFVKVSPSLAAGCTMILKPAEQTPLTALYYAHLAKLAGIPDGVLNVVPGFGPTAGAAISSHMDIDMVSFTGSTEVGREIMRAAASSNLKPVSLELGGKSPVIIFDDADVNKAAELALLGIVFNKGEICVAGSRVLVQEGIYDEFEKKLVEKAKAWVVGDPFDPKVQQGPQVDKKQFEKILSYIEIGKKEGATLLTGGKRVGNKGYYIEPTIFSNVKDDMRIVQEEIFGPVMALRKFKTIEDAIKIANSTKYGLASGIVTKSLDTANTVSRSIRAGIVWINCYFIFGNDIPYGGYKMSGFGRDFGLEALHKYLQVKSVVTPIYNSPWL* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0555 501 SUPERFAMILY ALDH-like 15 497 IPR016161 GO:0016491
Vra1g0555 501 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 267 274 IPR029510 GO:0016491
Vra1g0555 501 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 271 460 IPR016163 GO:0016620
Vra1g0555 501 Pfam Aldehyde dehydrogenase family 30 491 IPR015590 GO:0016491
Vra1g0555 501 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 4 501 - -
Vra1g0555 501 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 295 306 IPR016160 GO:0016491
Vra1g0555 501 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 4 501 - -
Vra1g0555 501 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 489 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0555 Vra-Chr1 6495606 6501061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0555 4 501 Aldehyde Dehydrogenase Gene Family AT3G24503 69.062 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0555 K12355 - gmx:100791396 902.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3118 7 50964874 50972130 Vra1g0555 1 6495606 6501061 PCT