Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0554 ATGGCAAGTCACTCACAACCCTTTGTCCAGATTCCAGCAGTAAAGTTTACCAAGCTTTTCATCAATGGAGAATTTGTAGATTCTATTTCAGGGAAAACGTTTGAGACTGTTGATCCAAGAACAGAGGAAGTGATTGTTGAAATAGCAGAAGCTACCAAAGAAGACGTTGATATTGCTGTGAAGGCTGCACGTGAAGCATTTGATTTTGGTCCATGGCCACGTATGCCTGGTGCTGAAAGAGCAAAGATTATGCTGAAATGGGCGCAACTAATTGAACAGAATGTAGAAGAAATAGCAGCATTGGACACCATTGATGGAGGAAAGCTTTTCAGTTGGTGTAAGGCTGTGGATGTTCCTGAAGCCTGCAACATCCTACGTTACTATGCTGGTGCTGCTGATAAAATTCATGGAAATGTGTTCAAAACATCTCGTGACCTCCAGTTGTATTCTCTTATGGAACCTGTTGGTGTTGTTGGTCACATTATCCCTTGGAATTTCCCTACTGTCATGTTCTTTGCCAAGGTCGCCCCGGCCTTGGCGGCTGGTTGCTCCATGGTCATCAAGCCTGCTGAGCAAACACCTCTCTCATCACTCTTCTATGCTCATCTTGCTAAGTTGGCTGGTATCCCAGATGGAGTGCTCAATGTAGTACCTGGATTTGGCTCAACTGCAGGGGCTGCAATAAGCTCACATATGGACATTGATGCGGTCAGCTTTACAGGTTCAACAGAAACAGGTCGTAAAATAATGCAGGCTGCGGCCTTGAGCAATTTGAAACCTGTTTCTCTTGAATTGGGAGGAAAGTCACCAGTGTTGATTTTTGATGATGCTGATATAGACAAAGCTGTTGATCTTGCTCTCTTTGGCATTCTACACAACAAGGGAGAAATCTGTGTTGCATTCTCCAGAGTTTTTGTCCAGGAAGGGATATATGATGAATTTGAGAAAAGGGTTGTGGAGAAGGCTAAAACTTGGATAGTAGGAGACCCTTTTGATCCAAAAGTTCAACAGGGACCCCAAACTAGTAAGGCACAATTTGATAAAATTCTTTCCTATATTGATCATGGAAAGAGTGAAGGAGCCACGCTATTGACTGGGGGAAAACCAGTGGGCAAAAAGGGATACTACATTGAGCCAACCATTTTTACCAATGTTAAGGAGGATATGCTAATTGCACAAGAGGAAATATTTGGACCTGTGATGACACTTTCTAAGTTCAAAACCATTGAGGATGCAATTAAGAAAGGCAACAGCTCCAAATATGGCCTAGCTGCAGGGATTGTGACCAAGAACTTGGATATTGCCAACACTGCATCAAGGTCCATCCGTGCAGGCATCATTTGGATCAACTGCTTCTTTGCATTTGATATTGACTGCCCTTTTGGAGGGTATAAGATGAGTGGATTTGGAAGAGATTATGGACTGGAAGCACTTCATAAGTATCTTCAAGTTAAATCTGTTGCAACTCCTATTTACAATTCTCCCTGGCTTTGA 1494 0.4284 MASHSQPFVQIPAVKFTKLFINGEFVDSISGKTFETVDPRTEEVIVEIAEATKEDVDIAVKAAREAFDFGPWPRMPGAERAKIMLKWAQLIEQNVEEIAALDTIDGGKLFSWCKAVDVPEACNILRYYAGAADKIHGNVFKTSRDLQLYSLMEPVGVVGHIIPWNFPTVMFFAKVAPALAAGCSMVIKPAEQTPLSSLFYAHLAKLAGIPDGVLNVVPGFGSTAGAAISSHMDIDAVSFTGSTETGRKIMQAAALSNLKPVSLELGGKSPVLIFDDADIDKAVDLALFGILHNKGEICVAFSRVFVQEGIYDEFEKRVVEKAKTWIVGDPFDPKVQQGPQTSKAQFDKILSYIDHGKSEGATLLTGGKPVGKKGYYIEPTIFTNVKEDMLIAQEEIFGPVMTLSKFKTIEDAIKKGNSSKYGLAAGIVTKNLDIANTASRSIRAGIIWINCFFAFDIDCPFGGYKMSGFGRDYGLEALHKYLQVKSVATPIYNSPWL* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0554 497 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 456 IPR016163 GO:0016620
Vra1g0554 497 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 21 485 IPR016162 GO:0016491
Vra1g0554 497 PANTHER CYTOSOLIC ALDEHYDE DEHYDROGENASE 3 497 - -
Vra1g0554 497 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491
Vra1g0554 497 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491
Vra1g0554 497 Pfam Aldehyde dehydrogenase family 26 487 IPR015590 GO:0016491
Vra1g0554 497 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 3 497 - -
Vra1g0554 497 SUPERFAMILY ALDH-like 9 493 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0554 Vra-Chr1 6477517 6481098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0554 9 497 Aldehyde Dehydrogenase Gene Family AT3G24503 68.980 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0554 K12355 - gmx:100784449 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3117 7 50955133 50958512 Vra1g0554 1 6477517 6481098 PCT