Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0548 ATGCCGCGATCCAATTCCGCCGCGCACCACCACCGTCAGAGCTCCGACAACTACATCCTCGACGCTCACAGAAGCTGGTTACAGTCTTCGACTTTCGCGCAGGAGTTCGGGGCTCGATCTTCGAGCTTGAGGAAAATTGACGATGATCGTATTTTGAGCAGCGGCTTGCTTGATCTGCATTCCTTAGATACCGAGCTTTTACCTGAGAGTTTTGATGACTATGAATCAATCCTCTCTGGTAACAAACATGTACAAAGGTCTCGGGGATTGCCTGAGAACATTTTTCTGAAAAGTGTCCCAACAGAAAAGGAGAGAGCAAACAATGTTGCCAAGATTAAAGTAGCGGTCCGGAAGAGACCCCTTAATAAGAAGGAAATAGCAAAGAGAGAAGAAGACATTATTTCTATAGATTCAAATTTTCTCACAGTGCATGAAAGAAAACTCAAGGTGGACTTAACAGAATATGTTGAGAAACATGAATTTGTCTTTGATGCTGTGCTGAACGAAGATGTTTCAAATAATGAAGTATATGCCGAGACTGTGGAGCCAATTGTTCCTCTAATTTTCCAACGAATAAAAGCAACTTGCTTTGCATACGGTCAAACTGGCAGTGGGAAGACATATACTATGCAACCATTGCCTCTCAAAGCTTCACAAGATATTTTAAGATTAATGCACCACACCTACTGGAATCAAGGTTTCCAATTGTTTGTTAGTTTCTTTGAAATATATGGGGGAAAACTTTTTGATCTCCTCAATGATCGAAAAAAACTTTTCATGAGGGAGGATGGGAAACAACAGGTTTGCATTGTTGGCTTGCAAGAATATAGAGTATCTAAAGTAGAGACAATCAAGGAATTTATTGAGAAAGGAAATGCCACAAGAAGTACTGGCACAACTGGAGCAAATGAGGAATCCTCTCGATCACATGCTATACTTCAGCTATGCATTAAGAGATCAGCTGATGGGACTGAATCAAAGCCTGCTCGACTTGTGGGCAAACTATCTTTTATAGATCTGGCTGGAAGTGAACGAGGTGCAGATACTACAGATAATGACAAGCAGACTAGGATTGAAGGGGCAGAAATAAATAAAAGCTTACTTGCTCTGAAAGAATGCATTAGAGCTTTGGACAATGACCAAGGGCATATCCCTTTCAGAGGAAGTAAATTGACGGAAGTTCTGCGAGATTCTTTTGTTGGTAATTCGCGCACTGTAATGATATCATGCATTTCACCTAGCTCAGGTTCATGCGAGCATACTCTTAACACGTTAAGATATGCTGACAGAGTGAAGAGCCTGTCAAAAGGAAACAACTCTAGAAGGGATCCTCTTTCTTCCTCAAACCTGAGAGAGTCCACTGTGTTGCCTGGGTCTTCAATTTTAGCTCATGATGATACCTTGGAGGATGAAATAACGTATGTCTCCAGTGACAGGAATCGATTTGGTTGGCCAAGACATCCAGAAAGAGAACTCTCTCCTCCAAATAATGTGGACCGTGTTCCAAGTGGTAGAATGGGGGGAAATTTGGCGTCATCTGGGTATTCTAATCCACCAAACGGTTCAAGAGGTGGTCAAAATGACAGAACTGCAAATGAATATGATTACATAGGACCCATACACGAACAAGACAGAACAAGAAAAACGATTAAGAGGGTGGATAACAACCACTTATCTGCTTTTGAGAACAAGAAGAAGATAGAATCTCGGGTTAATATTGATGCATCACTTTTTCAGACTACTTATTCTGATCCGGATGATAATTTAAATGCCCTCCTGAAGGAAGAGGAAGATCTAGTAACAGCTCATCGTAGACAGGTGGAGGAAACCATAGACATTGTTAGAGAGGAGATGAATTTACTTGTTGAAGCTGACCAACCAGGGAATCAATTGGATGATTATATTTCCAAATTGAATACCATTTTATCACAAAAGGCTACAGGAATCCTTCAATTGCAGACACAGTTGGCTCAGTTTCAGAGACGTTTAAACGAGTATAATGTTTTCGTATCTTCTGGTAATTGA 2025 0.4099 MPRSNSAAHHHRQSSDNYILDAHRSWLQSSTFAQEFGARSSSLRKIDDDRILSSGLLDLHSLDTELLPESFDDYESILSGNKHVQRSRGLPENIFLKSVPTEKERANNVAKIKVAVRKRPLNKKEIAKREEDIISIDSNFLTVHERKLKVDLTEYVEKHEFVFDAVLNEDVSNNEVYAETVEPIVPLIFQRIKATCFAYGQTGSGKTYTMQPLPLKASQDILRLMHHTYWNQGFQLFVSFFEIYGGKLFDLLNDRKKLFMREDGKQQVCIVGLQEYRVSKVETIKEFIEKGNATRSTGTTGANEESSRSHAILQLCIKRSADGTESKPARLVGKLSFIDLAGSERGADTTDNDKQTRIEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGSCEHTLNTLRYADRVKSLSKGNNSRRDPLSSSNLRESTVLPGSSILAHDDTLEDEITYVSSDRNRFGWPRHPERELSPPNNVDRVPSGRMGGNLASSGYSNPPNGSRGGQNDRTANEYDYIGPIHEQDRTRKTIKRVDNNHLSAFENKKKIESRVNIDASLFQTTYSDPDDNLNALLKEEEDLVTAHRRQVEETIDIVREEMNLLVEADQPGNQLDDYISKLNTILSQKATGILQLQTQLAQFQRRLNEYNVFVSSGN* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0548 674 Coils Coil 604 624 - -
Vra1g0548 674 MobiDBLite consensus disorder prediction 509 529 - -
Vra1g0548 674 ProSiteProfiles Kinesin motor domain profile. 111 434 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0548 674 ProSitePatterns Kinesin motor domain signature. 333 344 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vra1g0548 674 MobiDBLite consensus disorder prediction 479 494 - -
Vra1g0548 674 MobiDBLite consensus disorder prediction 438 452 - -
Vra1g0548 674 MobiDBLite consensus disorder prediction 479 531 - -
Vra1g0548 674 PANTHER KINESIN-LIKE PROTEIN 38 672 - -
Vra1g0548 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 434 IPR027417 -
Vra1g0548 674 SMART kinesin_4 109 440 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0548 674 Gene3D Kinesin motor domain 93 437 IPR036961 -
Vra1g0548 674 MobiDBLite consensus disorder prediction 433 452 - -
Vra1g0548 674 Pfam Kinesin motor domain 117 433 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0548 674 PANTHER KINESIN-RELATED PROTEIN 6 38 672 - -
Vra1g0548 674 CDD KISc_KIF2_like 111 432 - -
Vra1g0548 674 PRINTS Kinesin heavy chain signature 191 212 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0548 674 PRINTS Kinesin heavy chain signature 300 317 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0548 674 PRINTS Kinesin heavy chain signature 334 352 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra1g0548 674 PRINTS Kinesin heavy chain signature 384 405 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0548 Vra-Chr1 6432608 6438092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0548 110 434 Calmodulin-binding Proteins AT5G65930 34.328 2.49e-44 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0548 K10393 - gmx:100775562 1151.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0548 1 6432608 6438092 Vra1g0548 1 6432608 6438092 ECH