Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0547 ATGATGGAACACAACATCATCAGCAACACCAACAACGTGATCGCACCGTTTGTCATAAAAACCTACAACATGGTTAACGATCCCACCACCGATAAACTCATCACGTGGGGCCCAGCCAACAACAGTTTCATCGTCCTCGACCCTCTCGACTTCTCTCACTCACTCCTCCCTGCTTTCTTCAAGCATAACAATTTCTCCAGCTTCGTTCGCCAACTCAACACCTACGGTTTCAGAAAGGTGGATCCGGATCGGTGGGAATTCGCGAACGAGTGGTTCCTGCGGGGGCAGAAGCATTTGTTGAGGAACATCGTGCGGCGGAAGCATGGCGGAGGTAGGAGCAGTAATTTGCATTTGCATACCCTGAAGCTGGAGGAGTTGGACGACGAGGCCATGGTGATGGAGATAGCGAAGCTGAAGGAGGAGCAGAAAGCGTTGGATGAAGAGCTTCGAGGAATGAACAAGAGGTTAGAGACAACGGAAAAACGACCGCAGCAAATGATGGCTTTTCTGTCAAAGGTTGTCGAGGACCCGCAAGTTCTCTCTCGGATTCTCCGAGAAAGAGAAAGAAAACACCTCAGCGAGAAAAAGAGACGCCTAATTCCTTCGTCTTCGACGGCGGCGACCTCCTCCTCCTCATCCGGCATCAAGACGGAGTTCCAAGAGGACGAAGGTAATAACATCATTTCTTCATCGCCGGAGACGGGTTTGGAAATCGATAATAATAATATTATATATTCGCCGGCGACGGTGGGGTATTGGGGGGAACAGGGATGTTATGGGTATAATTGCGGCGGAGTAACGACGCCGTTGACGGTGGTGACACCGGCGGCGCCGGCGATGGGAGGAGGGTATTTGGGGCGTGGGAGTTATTTTGGGGAAATGGCAGCGGAGGGGAGTGCTCTGCCGCCTTATCCGTTTTCGTTGTTGGAAGGTGGGTTTTAG 942 0.517 MMEHNIISNTNNVIAPFVIKTYNMVNDPTTDKLITWGPANNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLRNIVRRKHGGGRSSNLHLHTLKLEELDDEAMVMEIAKLKEEQKALDEELRGMNKRLETTEKRPQQMMAFLSKVVEDPQVLSRILRERERKHLSEKKRRLIPSSSTAATSSSSSGIKTEFQEDEGNNIISSSPETGLEIDNNNIIYSPATVGYWGEQGCYGYNCGGVTTPLTVVTPAAPAMGGGYLGRGSYFGEMAAEGSALPPYPFSLLEGGF* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0547 313 MobiDBLite consensus disorder prediction 191 222 - -
Vra1g0547 313 Gene3D - 9 107 IPR036388 -
Vra1g0547 313 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra1g0547 313 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 306 IPR027725 -
Vra1g0547 313 Coils Coil 123 162 - -
Vra1g0547 313 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra1g0547 313 MobiDBLite consensus disorder prediction 199 222 - -
Vra1g0547 313 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra1g0547 313 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra1g0547 313 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra1g0547 313 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra1g0547 313 SUPERFAMILY "Winged helix" DNA-binding domain 14 106 IPR036390 -
Vra1g0547 313 PANTHER HEAT STRESS TRANSCRIPTION FACTOR C-1 15 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0547 Vra-Chr1 6418975 6420728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0547 13 207 HSF AT3G24520 63.317 9.33e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra1g0547 HSF_DNA-bind 4.9e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0547 K09419 - gmx:100794896 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0547 1 6418975 6420728 Vra1g0547 1 6418975 6420728 ECH