Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0542 ATGATTATTTTGTTCATTTTCTTAAAAATTGCAGAATCAACGAACATTGCTAATTTTGAAAAAACTGGGGAGCCTAGTCCATCCGAAACACATGCAAAACATAATGAACATTCTAGATCTGGGAAGGTTGTATCAAGGACACGAAGTGCATCACTTTCTATTCCTGTAATCTCCATGGAGTCATATGAGAGAGAAATTAGTCTTGTGGGTCATACTGGTCGACTTCCTAGTGTAAGAAAACCATCCTTACCCTTGATGCTTATGAGTGGGCCACTATATGTTACCAATGGAACTGAAAATCCTTTGAAGCACACTATAGTTCTGGAAGGAAACAAAGTAGTGGAGAGCAAGACAGAAAAATTTTGTAATCTTAGTGAGAAAGATGAAAATCATTGCAATAACAACTATGATAGAAAGAATGAACACTTGGTGAGGTCTAGGCTACTCGGAATATGTAATGATCCTTATTGTATTACTTGCCCAACTTACTTCAAGACCTCTATGCAAAGACTTCCAAATGATTCCACTGTGTTTGATCCCCAGTGCTCTTTATGGGGATGCCAAGGGTTTTGGTAG 576 0.3802 MIILFIFLKIAESTNIANFEKTGEPSPSETHAKHNEHSRSGKVVSRTRSASLSIPVISMESYEREISLVGHTGRLPSVRKPSLPLMLMSGPLYVTNGTENPLKHTIVLEGNKVVESKTEKFCNLSEKDENHCNNNYDRKNEHLVRSRLLGICNDPYCITCPTYFKTSMQRLPNDSTVFDPQCSLWGCQGFW* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0542 191 MobiDBLite consensus disorder prediction 20 46 - -
Vra1g0542 191 PANTHER CYCLIC NUCLEOTIDE-GATED CATION CHANNEL PROTEIN 16 161 - -
Vra1g0542 191 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 16 161 - -
Vra1g0542 191 MobiDBLite consensus disorder prediction 26 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0542 Vra-Chr1 6357520 6359459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0542 38 179 Ion Channels AT3G17700 35.862 2.59e-19 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0542 K05391 - vra:111242011 390.963