Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0537 ATGTCAACAGCCCCAGCGCCGTCTTCGCCGCCGTCCAACAGCACCGCGCCTCCGCCGTCCACCCCGTCGGCACCACCGCCCGCCACACCTTCCGCGCCTCCTCCTGCGACTCCGTCGTCACCTCCACCTTCACCTCCGTCATCTCCGCCACCAGCGACTCCCTCCGCTCCTCCGCCGGCGACACCTTCTTCGCCACCTCCGTCGACTCCGTCTGCTCCTCCACCGTCTACTCCTTCGACTCCATCCCCGCCGTCAACCACTCCACCATCGAGTTCTCCTCCCTCGCCTCCGTCTAGTTCTCCTCCCTCACCGCCGTCGGGGTCTTCACCATCGCCACCTAGTAGCGGCGGTGGCGGAGGTGGCAGCACTCCAAGTCCACCGTCTCGGAGCTCGCCTTCTCCTCCGTCCGGATCGAGTCCAACCACGCCTTCGCCTCCGCCGTCGTCTTCATCTGGTATTTCGACTGGTGTGGTGGTCGGAATCGCCGTGGGGGCCGTCGCGATTCTTGTTGTGTTAAGCATTCTCTGCATATGCTGTCGGAAGAAGAAGAGAAGACGCGACGAGGAGTACTATGCTCCGCCGCAACCGCCGAGGGGACCCAAAGATGATTACGGTGGTCCGCCGCGTCAATGGCAACACAATGTTCCTCCTCCGCAAGATCATGTGGTTTCAATGATGCCTCCAAAGCCAACACCTCCACCGGCTCCGGCTTATGCTGCTCAACCTCCTCCACCTCCGCCTCCTTTTATCATCAGCAGTAGCGGGTCTGGATCAAACTATTCAGGTGGCGAACCACTTCCGCCTCCTTCTCCGGGAATTTCATTGGGGTTCTCTAAGAGCACTTTTACCTACGAGGAGTTGGCACGAGCAACAGATGGATTCTCTGATGCGAACCTCCTCGGACAAGGTGGATTCGGATATGTTCACAGAGGAATTCTTCCCAATGGCAAGGAGGTGGCAGTGAAGCAATTGAAGGCTGGAAGTGGGCAAGGGGAGCGTGAGTTCCAGGCTGAGGTTGAGATAATTAGCCGTGTTCATCACAAGCATCTTGTATCTTTGGTTGGATACTGCATCACTGGGTCCCAGAGGTTGCTTGTTTATGAATTTGTTCCGAACAACACATTGGAGTTCCATTTGCATGGAAGAGGACGACCTACCATGGATTGGCCCACAAGACTAAGAATTGCTTTAGGATCTGCTAAGGGACTGGCGTATCTTCATGAAGATTGTCATCCTAAGATCATCCATCGTGATATCAAATCTGCCAACATCCTTCTGGATTTTAAGTTCGAAGCAAAGGTTGCAGATTTCGGTCTTGCTAAGTTTTCTTCTGATGTTAATACTCATGTTTCTACACGAGTGATGGGGACTTTTGGGTATCTGGCTCCAGAATATGCTTCTAGTGGAAAACTCACAGACAAATCAGATGTTTTCTCCTATGGAGTCATGCTCCTTGAGTTGATAACTGGACGGCGACCAGTTGATAAAACTCAGACATTCATGGAGGATAGTTTGGTAGACTGGGCTAGACCTTTGCTCACACGAGCTTTGGAAGAGGATGATTTTGACTCTATTATTGACCCAAGGCTTCAGAATGACTATGATCCTAATGAGATGGCACGAATGGTGGCATGTGCCGCAGCTTGCACACGTCATTCAGCAAAGCGCCGACCAAGGATGAGCCAGGTTGTGCGTGCTTTGGAAGGAGATGTGTCTCTAGCAGATCTTAACGAAGGAATCAAACCTGGACACAGCACCATGTACAGTTCTCATGAAAGTTCAGATTATGATACTGTACAGTATAGGGAAGACATGAAAAAGTTCAGAAAAATGGCACTGGGAACTCAGGAATATGGTGCAAGCAGCGAATACAGTGCAGCTACAAGTGAGTACGGTTTAAACCCATCTGGTTCGAGCAGTGAAGCGCAGAGCCGCCAAACCACAAGAGAAATGGAAATGAGAAAGATGAAGAACAGCCAAGGTTTCAGTGGAAGCTCTTGA 2001 0.5222 MSTAPAPSSPPSNSTAPPPSTPSAPPPATPSAPPPATPSSPPPSPPSSPPPATPSAPPPATPSSPPPSTPSAPPPSTPSTPSPPSTTPPSSSPPSPPSSSPPSPPSGSSPSPPSSGGGGGGSTPSPPSRSSPSPPSGSSPTTPSPPPSSSSGISTGVVVGIAVGAVAILVVLSILCICCRKKKRRRDEEYYAPPQPPRGPKDDYGGPPRQWQHNVPPPQDHVVSMMPPKPTPPPAPAYAAQPPPPPPPFIISSSGSGSNYSGGEPLPPPSPGISLGFSKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGRGRPTMDWPTRLRIALGSAKGLAYLHEDCHPKIIHRDIKSANILLDFKFEAKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSYGVMLLELITGRRPVDKTQTFMEDSLVDWARPLLTRALEEDDFDSIIDPRLQNDYDPNEMARMVACAAACTRHSAKRRPRMSQVVRALEGDVSLADLNEGIKPGHSTMYSSHESSDYDTVQYREDMKKFRKMALGTQEYGASSEYSAATSEYGLNPSGSSSEAQSRQTTREMEMRKMKNSQGFSGSS* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0537 666 MobiDBLite consensus disorder prediction 127 147 - -
Vra1g0537 666 MobiDBLite consensus disorder prediction 112 126 - -
Vra1g0537 666 Pfam Protein tyrosine and serine/threonine kinase 299 567 IPR001245 GO:0004672|GO:0006468
Vra1g0537 666 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Vra1g0537 666 ProSiteProfiles Protein kinase domain profile. 294 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0537 666 MobiDBLite consensus disorder prediction 221 251 - -
Vra1g0537 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Vra1g0537 666 MobiDBLite consensus disorder prediction 617 666 - -
Vra1g0537 666 MobiDBLite consensus disorder prediction 185 274 - -
Vra1g0537 666 MobiDBLite consensus disorder prediction 1 154 - -
Vra1g0537 666 SUPERFAMILY Protein kinase-like (PK-like) 269 567 IPR011009 -
Vra1g0537 666 SMART serkin_6 294 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0537 666 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 38 650 - -
Vra1g0537 666 MobiDBLite consensus disorder prediction 10 111 - -
Vra1g0537 666 PRINTS Proline rich extensin signature 11 27 - -
Vra1g0537 666 PRINTS Proline rich extensin signature 30 47 - -
Vra1g0537 666 PRINTS Proline rich extensin signature 54 79 - -
Vra1g0537 666 Gene3D Phosphorylase Kinase; domain 1 274 369 - -
Vra1g0537 666 Gene3D Transferase(Phosphotransferase) domain 1 370 578 - -
Vra1g0537 666 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 38 650 - -
Vra1g0537 666 MobiDBLite consensus disorder prediction 618 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0537 Vra-Chr1 6315846 6319861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0537 36 649 Trihelix Transcription Factor Family AT1G70460 46.677 5.81e-171 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vra1g0537 PK_Tyr_Ser-Thr 8.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0537 - - gmx:100781944 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0537 1 6315846 6319861 Vra1g0537 1 6315846 6319861 ECH