Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0534 ATGGCCACCATTCATCACCAATGGAGTACCTTCTCACTCTCTTTCCTCATTCTCTCCGTCATCCTCTACCAAAACCGAACTACCAATATTTCTCCTCCCCCTCCCAATTACATCATTGTCTTTCGCCACTACGCCGCCGTAGACAGCCACCGCACCTACCTCGAATCCGCCCTCCGCCCTGAGGGATGGCGCTGGATTCCGCGCCAGAACCCGGCGGCGCAGTTCCCCACTGATTTTGGACTGGTGGCCATCGAGGATTCTGGGGTGGTAGACGAGATTCGGAAACTGGGGTCGGTTAAATACGTGAGCTTGGACATGAGCTACAAGAGGAGTTTGATGACGAAAGATCAGAGATGCAACAAGAAGGTCGGGGCGTTCGAGAACGGGACGAAGCACCGCCGTGGGAAGATCATCACTGCTATGTCGTTTTGCGAGGCTGAAGAAGATGAAGAAAGTGTTGGCAATCACAGCAGTTCCGTCAAGTGGGGGCGGGAATTGATGATGCAGAGATCACAAGTTACTTCAATGTTTGGGACTGAAGATCTTTGGGCCAAAGGGTACACTGGTGCCAAGGTCAAAATGGCTATATTTGATACTGGCATTCAGGCTGATCACCCTCATTTTCGTAACATCAAGGAGTGTACTAATTGGACCAATGAAGATAAGTTGAATGATAATCATGGACATGGGACTTTTGTTGCGGGTGTAATTGCTGGTGTAAATTCTGAGTGTCTTGGTTTTGCACCAGACGTAGAGATATATGCATTTCGAGTGTTCACTGATGCCCAGGTAACATATACATCATGGTTCCTTGATGCCTTCAACTACGCAATTGCAACCAATATGGATGTCTTAAATTTGAGCTTAGGTGGACGTGATTACTTGGATCTCCCGTTTGTTGAAAAGATATGGGAGATATCAGCAAATAATATAATCATGGTTTCTGCAATTGGAAATAATGGACCATTTTATGGAACTTTGAACAATCCAGCAGATCAAAGTGATGTCATTGGTGTTGGTGGTATTGACTATAGTGACCATATAGCGTCCTTTTCCTCACGTGGCATGAGTACTTGGGAGCTTCCTCATGGTTATGGTCGTGTGAAGCCAGACATAGTTGCATATGGACGGGGCATTATGGGATCAAAAGTTAGTGCAGGCTGTAAACGCTTATCGGGAACTAGTATTGCTAGTCCTGTAGTTGCTGGTGTTGTATGTTTGCTTGTCAGTGTCATCCCTGATCGAGAGAGAAAAAATATCTTAAACCCGGCAAGCATGAAACAAGCATTGGTTGAGGGAGCTGCAAAGCTTTCTGGGCCTAACATGTATGAACAGGGTGCTGGCAGAGTTGATCTGTTAGCATCATATGAGATTCTTAAGAGCTACAAACCTAGGACAAGCATATTTCCCAGTGTTCTTGATTATACAGATTGTCCTTACACATGGCCATTTTGTCGTCAGCCACTCTATGCAGGTGCCATGCCTGTCATCTTCAATGCCACCATTTTGAATGGAATGGGTGTTATTGGATACGTTGAGAGTCCACCAACATGGCACCCTTTTGATGAAGAAGGGAATCTTCTAAGCATACATTTTACTTATTCTGAGATAATTTGGCCTTGGACTGGTTATTTGGCTCTTCACATGCAAATCAAGGAAGAAGGTGCACAGTTTTCTGGTAAGATTGAAGGTAATGTGACTCTCGAGGTCTCTAGCCCCCCAGCTCAGGGAGAGAAGGACCCTCGAGTTAGCATCTGTGTGCTTCAATTAAAATTAAACGTGGTACCAACACCACAACGTTCTAAACGAATTTTGTGGGATCAGTTTCACAATATCAAATACCCACCTGGATATATTCCTAGAGATTCCTTGGATGTTCCTAATGAAACTTTTGACTGGAATGGGGATCATTTGCATACAAATTTTCACATCATGTTCAACATATTACGAGATGCTGGTTACTACATTGAAACACTTGGTTCTCCTCTTACATGCTTTGATGCTCGGCATTATGGGACACTTTTGTTGGTGGATCTTGAGGATGAGTACTTTCCTGAGGAGATTGAAAAACTAAGAGATGATGTTGTAAATACTGGACTTGGATTAGCGGTCTTTGCTGAGTGGTATAATGTAGATTCCATGGCAAATATGAGTTTCTTTTATGACATTACAGGGAGCTGGTGGACCCCAGTCACTGGAGGTGCTAATATTCCTGCACTTAATGATCTTTTGGCTCCATTTGGGATTGCTTTTGGAGATAAGATTCTGAATGGTGATTTTTCGCTTTTGGGTGAGCGGATTCGGTATGCATCTGGGACAATTATAGCGAGGTTTCCGAGGGGTGGTTATCTTCATAGCTTTCCCTTCTTAGATAGTTCAAAAAGTGAAGCCACACAGAGTTTGCTGCTAACTTCTGGCTCAACCAAGGCAGATTCTCCAATTCTTGGTCTCATGGCAATGGGTGAAGGTCGCATAGCTGTGTATGGGGATTCCAATTGTTTGGACAGCAGTCATATGATGACAAATTGTTTTACCCTTCTGAGGAAAATACTGGATTTTACTAGTGAAGATGTTAGAGATCCAACACTTTTCTCTGATTCAATTAAACAAGATTCTTCCTTGTATGAAGCTGACAATCGCTTACCATCCCGCAGAACTGATATAAATTTCTCTGCATATTCAGCTATTGTGGGTAAGGAATTGATTTGTGGGACTGACACAAGGTTTGAAATGTGGGGAACTAAGGGCTACAGCTTGCAAGTAAGAGGAAGACCTATTATAAAAGGAAAGGGTGATTCTACGGGGAATAGCTACTTAGGCCTGTTCTATGAGCGTGATGCACCCATGCTGGTTGTTGGTCATTGGCTAGTTCCTTTTGTTTTTGCAGTAACTGGTATTTTGCTATTGAGTTTTTGGCACATTCGTCAAAAGAGACATAGACGAAGGGACGGATCAAGTTCTAGTATATTGACCTATGAAGTTTAA 2985 0.4355 MATIHHQWSTFSLSFLILSVILYQNRTTNISPPPPNYIIVFRHYAAVDSHRTYLESALRPEGWRWIPRQNPAAQFPTDFGLVAIEDSGVVDEIRKLGSVKYVSLDMSYKRSLMTKDQRCNKKVGAFENGTKHRRGKIITAMSFCEAEEDEESVGNHSSSVKWGRELMMQRSQVTSMFGTEDLWAKGYTGAKVKMAIFDTGIQADHPHFRNIKECTNWTNEDKLNDNHGHGTFVAGVIAGVNSECLGFAPDVEIYAFRVFTDAQVTYTSWFLDAFNYAIATNMDVLNLSLGGRDYLDLPFVEKIWEISANNIIMVSAIGNNGPFYGTLNNPADQSDVIGVGGIDYSDHIASFSSRGMSTWELPHGYGRVKPDIVAYGRGIMGSKVSAGCKRLSGTSIASPVVAGVVCLLVSVIPDRERKNILNPASMKQALVEGAAKLSGPNMYEQGAGRVDLLASYEILKSYKPRTSIFPSVLDYTDCPYTWPFCRQPLYAGAMPVIFNATILNGMGVIGYVESPPTWHPFDEEGNLLSIHFTYSEIIWPWTGYLALHMQIKEEGAQFSGKIEGNVTLEVSSPPAQGEKDPRVSICVLQLKLNVVPTPQRSKRILWDQFHNIKYPPGYIPRDSLDVPNETFDWNGDHLHTNFHIMFNILRDAGYYIETLGSPLTCFDARHYGTLLLVDLEDEYFPEEIEKLRDDVVNTGLGLAVFAEWYNVDSMANMSFFYDITGSWWTPVTGGANIPALNDLLAPFGIAFGDKILNGDFSLLGERIRYASGTIIARFPRGGYLHSFPFLDSSKSEATQSLLLTSGSTKADSPILGLMAMGEGRIAVYGDSNCLDSSHMMTNCFTLLRKILDFTSEDVRDPTLFSDSIKQDSSLYEADNRLPSRRTDINFSAYSAIVGKELICGTDTRFEMWGTKGYSLQVRGRPIIKGKGDSTGNSYLGLFYERDAPMLVVGHWLVPFVFAVTGILLLSFWHIRQKRHRRRDGSSSSILTYEV* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0534 994 ProSitePatterns Serine proteases, subtilase family, serine active site. 393 403 IPR023828 -
Vra1g0534 994 SUPERFAMILY Subtilisin-like 23 522 IPR036852 GO:0004252|GO:0006508
Vra1g0534 994 PANTHER MEMBRANE-BOUND TRANSCRIPTION FACTOR SITE-1 PROTEASE 35 850 - -
Vra1g0534 994 PRINTS Subtilisin serine protease family (S8) signature 189 208 IPR015500 -
Vra1g0534 994 PRINTS Subtilisin serine protease family (S8) signature 225 238 IPR015500 -
Vra1g0534 994 PRINTS Subtilisin serine protease family (S8) signature 392 408 IPR015500 -
Vra1g0534 994 PANTHER PEPTIDASE S8 35 850 - -
Vra1g0534 994 ProSitePatterns Serine proteases, subtilase family, histidine active site. 229 239 IPR022398 -
Vra1g0534 994 Pfam Subtilase family 190 439 IPR000209 GO:0006508|GO:0008236
Vra1g0534 994 Gene3D Peptidase S8/S53 domain 166 457 IPR036852 GO:0004252|GO:0006508
Vra1g0534 994 ProSiteProfiles Serine proteases, subtilase domain profile. 161 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0534 Vra-Chr1 6256156 6262011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0534 263 972 Subtilisin-like Serine Gene Family AT5G19660 73.522 0.0 1129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0534 K08653 - gmx:100819188 1715.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0534 1 6256156 6262011 Vra1g0534 1 6256156 6262011 ECH