Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0530 ATGGGGGAAGGCGAAGGAGGAGATATCGCTCCGAAGAATGCGTTGTCGTCGGAAGTTGTTCCGCCGGCGGTAACGTCTACGGCGGCGCTGGAAGTTCCGGCGAAGAAGCTGGCGCGGCAGCTTGATTTCACGGGCGCGCCGGAGCATCCCCAGCAGCAGCCGGTGGCGGTGTTGCCGTTGCCGCCACAGGCGCCTCATTCGAGGATTGGGAAACCAGAATCTCCAAAATCTAGATCAAGACCTAACTTTGAAATGAAAGATGCTACACCCAAGAAGCAAAAGCAGTGCAATTGTAAACACTCTAAATGCTTAAAGCTGTATTGTGAATGTTTTGCATCAGGAATATATTGTGATGGTTGCAACTGTGTAAATTGTTTCAACAATGTTGAAAACGAAGCTGCTAGAAGAGAAGCTGTTGAAGCTACCTTGGAGCGCAATCCAAATGCATTTAGGCCCAAAATTGCTAGTAGCCCTCATGGAACACGTGATAGCAGGGAGGAAGCCGGGGAAGTTTTAATATTAGGAAAACACAACAAGGGGTGTCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAATGCTTTCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAAAGGCAGGCTTTGTTTCATGGAGATCAAAATAACATGGCATATATTCAGCAAGCGGCAAATGCTGCCATAACTGGAGCTATTGGTTCCTCTGGCTATTCATCACCTCCGGTTTCCAAGAAAAGAAAAGGTCAAGAACTCTTCTTTTGGCCTACAGCCAAGGATCCATCGATTAGCAAGTTGGGACAACAGGTAAACCATGTTAGAGGTCCAGCACCTTCCTCATCTTTGTCACCTGTCTCAGGCGCTCGTGTTGGAACTGCAACATTAGGTCCTTCAAAATTTATGTACAGGTCTCTTTTAGCAGACATTATTCAACCACAGCACCTCAAGGAGCTATGCTCAGTTCTGGTGCTAGTATCAGGACAAGCTGCAATGACACTTTCAGACCAGAAAATTTTAACGGAAAAGCATGCAGAAGATCAGACAGAAACTTCCCTTGCCTCGTCAAGTCAAGAGCGATTACCACCAAGTCAAAAGGAAGGTCATGTTGAGAAGACTGTGGCTGATGATTGTTCGAGTGCAAACCAAACAGATAAAATCAGCCCAGATGATTCCAGTTCAGATGGTGCTGATGTCCCAAAAGGGAGGCCAATGTCACCTGGGACTTTAGCCTTGATGTGTGATGAGCAAGATACAATGTTCATGACAGCCGCCTCCCCTATTGGGCCAATGGCTCATGCTTGCAATACATCTTCACAATTTCCTTATGGACAAGGAATGACAGAGGTCTATGCTGAGCAAGAAAGGATTGTATTAACAAAGTTTAGGGATTTTCTCAATAGGGTTATAACTATGGGAGAAATAAATGAAACAAAGTGTTCTTCGTTGGCCAGAAATGAATTAGAGAATCAAAAGGACCCAATCATCAATGGCGTAGGAAATGCCAACTCAGTGATAGTGCGTCAGCATGCAGCCAGTAGCAACGGTGTTACTAAACCTTCTGTTTCACCTTTGGCAACAACTTCGACACGCATGATCCCTGGCAATATTTCTGAAAATGGGGAAGCTAAGGTCAAGATCGAAAAAGATATATGA 1692 0.4492 MGEGEGGDIAPKNALSSEVVPPAVTSTAALEVPAKKLARQLDFTGAPEHPQQQPVAVLPLPPQAPHSRIGKPESPKSRSRPNFEMKDATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREEAGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNMAYIQQAANAAITGAIGSSGYSSPPVSKKRKGQELFFWPTAKDPSISKLGQQVNHVRGPAPSSSLSPVSGARVGTATLGPSKFMYRSLLADIIQPQHLKELCSVLVLVSGQAAMTLSDQKILTEKHAEDQTETSLASSSQERLPPSQKEGHVEKTVADDCSSANQTDKISPDDSSSDGADVPKGRPMSPGTLALMCDEQDTMFMTAASPIGPMAHACNTSSQFPYGQGMTEVYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARNELENQKDPIINGVGNANSVIVRQHAASSNGVTKPSVSPLATTSTRMIPGNISENGEAKVKIEKDI* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0530 563 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 53 536 - -
Vra1g0530 563 MobiDBLite consensus disorder prediction 41 87 - -
Vra1g0530 563 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 179 213 IPR005172 -
Vra1g0530 563 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 93 128 IPR005172 -
Vra1g0530 563 SMART CXC_2 91 131 IPR033467 -
Vra1g0530 563 SMART CXC_2 176 217 IPR033467 -
Vra1g0530 563 MobiDBLite consensus disorder prediction 71 87 - -
Vra1g0530 563 MobiDBLite consensus disorder prediction 355 422 - -
Vra1g0530 563 MobiDBLite consensus disorder prediction 388 402 - -
Vra1g0530 563 ProSiteProfiles CRC domain profile. 92 216 IPR005172 -
Vra1g0530 563 PANTHER TESMIN/TSO1-RELATED 53 536 IPR028307 -
Vra1g0530 563 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0530 Vra-Chr1 6227138 6234714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0530 1 515 CPP Transcription Factor Family AT4G29000 54.983 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vra1g0530 TCR 3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0530 - - gmx:100818116 988.408