Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0516 ATGGATCCTCCGGCCAAGAGCTGGAGCATCCACATGCGCTCCGAGATAACGGCCAAGTACGATGTTATTGGTCGGGTCGGGTCGGGTGCCTACGCCGACGTGTACAACGGACGGCGCCGCTCGGACGGTGCGGCGGTGGCGCTGAAGGAGGTGCACGATTCCCAATCGGCGTCTCGCGAAATCGAAGCCCTGCGGATCCTGAAAGGGTCCCAAAACGTGGTCGTTCTGCACGAGTTCTTCTGGCGCGAGGACGAGGACGCGGTTCTCGTGCTCGAGTTTCTCGGAACCGACCTCGCCGCCGTGATCGGAAAAGGTGGTGTCGGAGTCGGTGAGGTTAAGAGGTGGATGGTGCAGGCTCTGACTGCTGTGGATGAGTGCCACCGGAATATGATCGTTCATAGAGACTTAAAACCCGCGAATTTTTTAGTTTCCGATGACGGGGTGCTCAAGTTAGCAGATTTTGGACAGGCAAGGATACTAGTGGAGTGTGGATTCGATGGTCACCAGGAAGATGATGATGCTTCAAATAGTGAAAGATCACTCCAACAACATCCTGAAGCTATTTCCCAACTAGACAACTTAAATCAAACTGAAGAATATTTCAGAGTTTTAGATGAGATGAAAACCAAGAGCTACTCTTATGACACTGACAAGGAAGCAAATATCCATGATGGAAACACCTCATGTCTTGCAACATGCACAACGAGTGACATAGATGATGAACTTAGCAAAGGTTCTTTTACCTATGAAGCTGAGGAGGTGGGAGGGAATGAACTTGGCTGTCTGACATCATGTGTTGGAACACGCTGGTTTAGGGCTCCTGAGTTACTGTATGGATCCACAGACTATGGTGTAGAGGTTGATCTTTGGTCATTGGGGTGTGTTTTTGCTGAGCTCTTAACATCGAAGCCATTGTTTCCTGGAACAAGCGATGTAGACCAGCTTAGCAGAATTGTGAGTGTTTTCGGGAACATTAATGAGGAAACTTGGCCTGGTTGTTCCAAACTTCCTGATTATGGAAAAATCTCATTTTTCAAGGTGGAAAACCCAAGTGGTCTTGAAGCATGCTTGCCCAGTTGCACGCCTGATGAAGTTTCCCTAGTCAAAAGACTGGTTTGTTATGATCCAGATAAGAGAGCCACAGCAATGGAGTTACTTCAAGACAAGTATTTCAGTGAAGTACCACTTCCTGTTCCAGTTTCTGAGTTGTGGGTTCCTTTGATTAGTATTGGACATGAGAAGGATCGCCCTGGAGGGCACAATGAAATGGGTTCTGATTCTGATTTGGAGGAGTTTAGAACTTTGAATATCACCACAATTCCTTGA 1326 0.4789 MDPPAKSWSIHMRSEITAKYDVIGRVGSGAYADVYNGRRRSDGAAVALKEVHDSQSASREIEALRILKGSQNVVVLHEFFWREDEDAVLVLEFLGTDLAAVIGKGGVGVGEVKRWMVQALTAVDECHRNMIVHRDLKPANFLVSDDGVLKLADFGQARILVECGFDGHQEDDDASNSERSLQQHPEAISQLDNLNQTEEYFRVLDEMKTKSYSYDTDKEANIHDGNTSCLATCTTSDIDDELSKGSFTYEAEEVGGNELGCLTSCVGTRWFRAPELLYGSTDYGVEVDLWSLGCVFAELLTSKPLFPGTSDVDQLSRIVSVFGNINEETWPGCSKLPDYGKISFFKVENPSGLEACLPSCTPDEVSLVKRLVCYDPDKRATAMELLQDKYFSEVPLPVPVSELWVPLISIGHEKDRPGGHNEMGSDSDLEEFRTLNITTIP* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0516 441 PANTHER CELL DIVISION PROTEIN KINASE 15 401 - -
Vra1g0516 441 SMART serkin_6 20 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0516 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Vra1g0516 441 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vra1g0516 441 Gene3D Transferase(Phosphotransferase) domain 1 105 397 - -
Vra1g0516 441 Gene3D Phosphorylase Kinase; domain 1 11 104 - -
Vra1g0516 441 MobiDBLite consensus disorder prediction 169 188 - -
Vra1g0516 441 ProSiteProfiles Protein kinase domain profile. 20 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0516 441 SUPERFAMILY Protein kinase-like (PK-like) 13 397 IPR011009 -
Vra1g0516 441 Pfam Protein kinase domain 20 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0516 441 Pfam Protein kinase domain 262 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0516 441 PANTHER CYCLIN-DEPENDENT KINASE 10 15 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0516 Vra-Chr1 6151908 6154360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0516 4 437 Core Cell Cycle Gene Families AT4G28980 58.531 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Vra1g0516 Pkinase 2.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0516 - - gmx:548056 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3253 7 52100096 52102319 Vra1g0516 1 6151908 6154360 PCT