Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0510 ATGTCTGTGCCATTGGAACAAGGCTATGTAGGGTTATTAGAGGTTTCTGCAATGGAAAGTTCTGACAAGTTTTCTACTAGTGGTGGCTTGAACCTCAAGGCTACTGAGCTGAGGCTTGGTTTACCAGGTTCCGAGTCACCGGAGAGAGATGGGGGTGTGGAAGAAAAAAATGGGCACCCTTTGGGCATGGTCAAGAATTTGGTGTCTGGGGCCAAGAGGGGTTTCTCAGACACCATTGATGGGGGTTCTAGGAAATGGCTTCTCTCTGGGAATGGTGGATCTGAGGTGGGTTTGGGAAAAGATTGTGGCTTGTTCTCAACAAGGGGTATTGGTGCTAGTGCTGCCAAGGCTGAGTCTGCCAACCAACAAATTTCTGTTGTAAAAGATAAAGTTCCTCTGCCTCCAAAACCTTTGAATGAGAAGAAACCTCAGATATCTGCTCCTGCTGCAAAGGAACAGGTTGTGGGATGGCCACCAATCCGATCTTTCAGGAAGAACTCAATGGCCACTCAGCCTCAGAAGAATGATGATGATGCAGAAACCAAGTCAGGGTGCCTTTATGTGAAAGTTAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGATCTCAAAAACTTTAGCACTTACATGGAACTGTCTTCAGCACTGGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGGTTCTCATGGAGTTTCTGGTCGAGATAAGTTGAGCGAAAGTAGACTGATGGATCTGCTTCATGGTTCAGAATATGTTCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTGACTCATGCAAGAGGTTGAGGATAATGAAAAGTTCTGAAGCAATTGGACTAGCACCAAGAGCCATGGAAAAATGCAAAAGTCGCAACTAG 918 0.4521 MSVPLEQGYVGLLEVSAMESSDKFSTSGGLNLKATELRLGLPGSESPERDGGVEEKNGHPLGMVKNLVSGAKRGFSDTIDGGSRKWLLSGNGGSEVGLGKDCGLFSTRGIGASAAKAESANQQISVVKDKVPLPPKPLNEKKPQISAPAAKEQVVGWPPIRSFRKNSMATQPQKNDDDAETKSGCLYVKVSMDGAPYLRKVDLKNFSTYMELSSALEKMFSCFTISQCGSHGVSGRDKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRN* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0510 305 MobiDBLite consensus disorder prediction 131 151 - -
Vra1g0510 305 Gene3D - 179 299 - -
Vra1g0510 305 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 297 IPR003311 GO:0005634|GO:0006355
Vra1g0510 305 Pfam AUX/IAA family 35 296 IPR033389 -
Vra1g0510 305 ProSiteProfiles PB1 domain profile. 185 287 IPR000270 GO:0005515
Vra1g0510 305 MobiDBLite consensus disorder prediction 39 60 - -
Vra1g0510 305 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 12 297 - -
Vra1g0510 305 SUPERFAMILY CAD & PB1 domains 182 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0510 Vra-Chr1 6068068 6070624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0510 134 295 B3 DNA Binding Superfamily AT4G23980 25.926 5.06e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vra1g0510 AUX_IAA 1.6e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0510 K14484 - gmx:100803754 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0510 1 6068068 6070624 Vra1g0510 1 6068068 6070624 ECH