Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0494 ATGGAGCGCATCATCGGCGCCAAGTACAAGCTAGGTCGCAAGATCGGAAGCGGATCCTTCGGCGAAATCTACCTCGCGACGCATATTGATACCTTCGAAATCGTCGCGGTCAAGATCGAGAACAGTAAAACGAAGCATCCGCAATTGCTTTACGAGGCCAAACTCTACAATATTCTGCAGGGAGGAAGTGGCATCCCGAGCATAAAATGGTGTGGTGTCGACGGAGAGGATAATGTGCTTGTTATGGATTTGCTGGGACCTAGTCTTGAGGATCTGTTTGTTTACTGTGGAAGAAAGTTTTCCCTCAAAACCGTGTTGATGTTAGCTGATCAAATGATGACTAGAATTGAATATGTGCATTCTAAAGGATTCCTACACAGGGATATAAAACCTGACAACTTTCTCATGGGACTTGGTCGTAAAGCAAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAACGATATAGGGACTCCTCAACTAATCGCCACATTCCTTACAGGGAAAACAAAAACTTAACAGGGACTGCACGCTATGCAAGTTGTAATACTCATCTTGGGATTGAGCAAAGTCGACGGGATGATTTGGAGTCACTTGGGTATGTGCTTCTGTATTTTCTCAGAGGAAGCCTTCCTTGGCAAAACCTAAAGGCTGCAACAAAGAAGCAAAAGTATGATAAAATATGTGAGAAGAAAGTAGCAACTCCTATTGAGGTTTTATGCAAATCTCATCCCGTAGAGTTTGCTTCATACTTTCATTATTGTCACTCTCTAACCTTTGATCAGCGACCTGATTATGGATTCTTGAAGCGCCTGTTTAGGGATCTATTTGCTCGTGAAGGTTATGATTTTGATTATGTATTTGATTGGACTATTTTAAAGTACCAGCAAGCACAAAAGAATAGGGCCCAACCTCGCATGTCTACGGTCCCTGGAGCAAGCAACAGTCCTGCAGTGCCCATGGATGTGGACAACAATCGAGGGGATGTCTCAGCAGAACGCATTAAATCAGGCAATGTAACTGGTTCTGGTGTTAAAATTCAGTTTAAATCACCTGGTTTAAAAAATCTGGGTTCGGAAAAGCCTCTTGACAAGAATATTTTTGGTGAAGCAAATATACCCTCTACCTCATACTCTCTTGCTGGCACCTCAAAAAGGAACTCTTTGAAGCCTGCCTTGTCCACTGAAGCTGCAAACATAGTAAACGGACAAGGAAGTAACAAAATTGGCCCTTCAAGTAGCTGGATTTCATCTGTTCAGCGCATATCATCTGCCAAATGA 1281 0.4278 MERIIGAKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPSIKWCGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSSTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVATPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYDFDYVFDWTILKYQQAQKNRAQPRMSTVPGASNSPAVPMDVDNNRGDVSAERIKSGNVTGSGVKIQFKSPGLKNLGSEKPLDKNIFGEANIPSTSYSLAGTSKRNSLKPALSTEAANIVNGQGSNKIGPSSSWISSVQRISSAK* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0494 426 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vra1g0494 426 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0494 426 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0494 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vra1g0494 426 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0494 426 MobiDBLite consensus disorder prediction 303 321 - -
Vra1g0494 426 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Vra1g0494 426 MobiDBLite consensus disorder prediction 303 322 - -
Vra1g0494 426 PANTHER CASEIN KINASE-RELATED 1 409 - -
Vra1g0494 426 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 409 - -
Vra1g0494 426 Gene3D Transferase(Phosphotransferase) domain 1 1 333 - -
Vra1g0494 426 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0494 Vra-Chr1 5931724 5935602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0494 3 227 Miscellaneous Gene Families AT3G23000 28.632 3.14e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vra1g0494 Pkinase 9.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0494 K08960 - gmx:100805890 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0494 1 5931724 5935602 Vra1g0494 1 5931724 5935602 ECH
Vra7g3265 7 52188151 52192237 Vra1g0494 1 5931724 5935602 PCT