Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0493 ATGGCTTCTTCCTTTCGTCCCTCAATTTCTTCCTTCATGTTACCCTCTCTTTCTTCTTGCAACCCTTCTCAAAAGTTCTCTCTTTTTCATCTCGGTAGCGGTATTAGACGGTTTCATAATTTTGGCCTGAAACCTTCTAAGTTTTTGAGGCATGATGATGATAATTGCATGAGGGCGAAGGCATCTGGGAACACGTCCTCAATTGCTGCACCAGAAAATGCGCTGGATTGGGTTAAACATGACAAGAGAAAAATGCTTCATGTTGTGTATCGTGTTGGGGACTTGGACAAGACCATAAAATTTTATACAGAGTGCCTGGGAATGAAGGTTCTCAGACAGCGTGACATGCAAGAGCAGAGACATACTAATGCCTTTCTTGGATATGGGCCTGAGGATGCACACTTTGCTGTTGAACTAACATACAATTATGGGATTGACAAGTATGACATTGGAGATGGATTTGGTCATTTTGGTCTTGCTGTTGATGATATCTCAAGAATAGTGGAACTTGTCAGAGCTAAGGGTGGAAAAATTACTAGAGAGCCTATGCTTGTCAAGGGAGGCAACTCTGTAAATGCATTTATTGAAGATCCTGATGGTTATCAATTTGAACTTTTAGAAAGGGCTCCCTCTCCCGAGCCTTTGTGCAAAGTAATGCTTCGAGTTTGTGATCTTGACCGTTCCATCAAATTTTATGAGAAGGCTTTTGGTATGGAGCTACTTCGAACACAGGATTATCCAGAATCCAAGAAAACAATAGCAATACTGGGATATGGTCCAGAGGAAAAAAGTACTGTCCTGGAGTTGACTTACAACTATGGAGTCACGAAATATGATAAAGGAGATGCTTATGCTCAGATTGCAATTGCTACAGATGATGTGTACAAAACTGGCGAAGCAATTAAACTTGCAGGAGGGAAGATTACTCGGGAACCTGGACCAATACCTGACATAAAGACAAAGATCACATCATGTGAAGATCCTGATGGTTGGAAAACTGTTTTTGTAGATAATATTGACTTCATCAGGGAGCTGGAGTAG 1041 0.4121 MASSFRPSISSFMLPSLSSCNPSQKFSLFHLGSGIRRFHNFGLKPSKFLRHDDDNCMRAKASGNTSSIAAPENALDWVKHDKRKMLHVVYRVGDLDKTIKFYTECLGMKVLRQRDMQEQRHTNAFLGYGPEDAHFAVELTYNYGIDKYDIGDGFGHFGLAVDDISRIVELVRAKGGKITREPMLVKGGNSVNAFIEDPDGYQFELLERAPSPEPLCKVMLRVCDLDRSIKFYEKAFGMELLRTQDYPESKKTIAILGYGPEEKSTVLELTYNYGVTKYDKGDAYAQIAIATDDVYKTGEAIKLAGGKITREPGPIPDIKTKITSCEDPDGWKTVFVDNIDFIRELE* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0493 346 Gene3D - 56 210 IPR029068 -
Vra1g0493 346 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Vra1g0493 346 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 85 205 IPR004360 -
Vra1g0493 346 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 218 332 IPR004360 -
Vra1g0493 346 ProSitePatterns Glyoxalase I signature 1. 87 108 IPR018146 GO:0004462|GO:0046872
Vra1g0493 346 PANTHER LACTOYLGLUTATHIONE LYASE-LIKE PROTEIN 11 346 - -
Vra1g0493 346 TIGRFAM glyox_I: lactoylglutathione lyase 73 216 IPR004361 GO:0004462|GO:0046872
Vra1g0493 346 TIGRFAM glyox_I: lactoylglutathione lyase 215 338 IPR004361 GO:0004462|GO:0046872
Vra1g0493 346 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 84 208 IPR037523 -
Vra1g0493 346 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 214 338 IPR037523 -
Vra1g0493 346 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 216 338 IPR029068 -
Vra1g0493 346 CDD GlxI_Ni 85 206 - -
Vra1g0493 346 PANTHER LACTOYLGLUTATHIONE LYASE 11 346 - -
Vra1g0493 346 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 84 210 IPR029068 -
Vra1g0493 346 Gene3D - 211 346 IPR029068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0493 Vra-Chr1 5923006 5926743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0493 217 335 Calmodulin-binding Proteins AT1G08110 28.082 1.01e-08 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0493 1 5923006 5926743 Vra1g0493 1 5923006 5926743 ECH
Vra7g3269 7 52266884 52271850 Vra1g0493 1 5923006 5926743 PCT