Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0491 ATGAGGAAAACCAGAACCATGAATGAGCTTGGTGTTATCCTTTTTGTTCTCTCAGTCTTATTCCTCCATGTTAGAGCACAGACTGCTGCACCATCAGGAGATGCTGTGTCCAATTTCCAACCAAGTCTTGCTGTTGTCATAGGAATCCTTGGTGTGATGTTTCTACTGACATTCTTTCTTCTCATGTATGCAAAATTCTGTCAACACCGCGGAGCTTCAGCTTCTCTTGGAGACCAAGAAAATCTACCAACTTTTGTGAGATCAAGGTCTAGATTTTCAGGAATTGACAAGACTGTCATTGAATCACTCCCCTTCTTTAGATTCTCTTCACTCAAAGGGTCAAAGGAAGGACTGGAGTGTGCAGTGTGCTTATCAAAGTTTGAAGATGTCGAAGTTCTCAGACTTCTACCAAAGTGCAAGCATGCTTTTCATATTGATTGCATAGACCACTGGCTTGAAAGGCACTCTAGCTGTCCTATTTGCAGGCACAAGGTCAACCCTGATGACCACACTACCTTCACATATTCAAACAGTTTAAGGAGGCTAGCAAACCAATCAGGTCGAGGTGAAGAATCTAACTTAGAGATCTTTGTCCAGAGAGAGGAAGACCATCATGGTTCATCAAGATTCAGTGTTGGAAGCAGCTTTCGGAAAATGGGAAAGGGTGTCAAGGAAGAAGAATTGCTCATCCAAAAAGGAGCAGAAGATAGTGATGGTAACCAGAAGGGATATCATAAACACAACCACATGATTACTATATCTGATGTTGTGTTCAAGCACAGGTGGAGCAACGTCAGTTCTTCAGACCTCATGTTTTTGAATTCGGAGATGCTGAATGCTACATCAAGCAACAGATTCAGCAACTTCGAATCAAATGCAGACCTGATGTCAACCCCAAGAGAGTTGGTAGAAAATGATCATATTAAGAACATCAAGGAGGAGATGGAGAGGAAAATTTCCTTCGAGAGCAAAGTTAGTGCTCTTAGCAACATCAAATCAGTTTCAGAAAAGGATCCTCCTTTTACATCAGATTCTGCAGGAAAATCAAATCATGCACCAAAGTATGCCAACCCAGGTGAGAAAAGGTCAATGTCAGAAATCACTGCTGTCTCTAGATTTGGAGATTTTGGCACGAAAATGAGGGTCTTCAAGGATTCTTCTTCTGTCCAAAACAACCTTAAAGAGGAAAAAATGAGACAGATTTGGTTTCCAATAGCTAAAAGAACAGCTCAATGGTTTGTGAATAGAGAAAGAAGGTCTCAGCTATCTCTGGATAAACAACTACCATTAGATGTATAA 1299 0.4103 MRKTRTMNELGVILFVLSVLFLHVRAQTAAPSGDAVSNFQPSLAVVIGILGVMFLLTFFLLMYAKFCQHRGASASLGDQENLPTFVRSRSRFSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEVLRLLPKCKHAFHIDCIDHWLERHSSCPICRHKVNPDDHTTFTYSNSLRRLANQSGRGEESNLEIFVQREEDHHGSSRFSVGSSFRKMGKGVKEEELLIQKGAEDSDGNQKGYHKHNHMITISDVVFKHRWSNVSSSDLMFLNSEMLNATSSNRFSNFESNADLMSTPRELVENDHIKNIKEEMERKISFESKVSALSNIKSVSEKDPPFTSDSAGKSNHAPKYANPGEKRSMSEITAVSRFGDFGTKMRVFKDSSSVQNNLKEEKMRQIWFPIAKRTAQWFVNRERRSQLSLDKQLPLDV* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0491 432 MobiDBLite consensus disorder prediction 333 350 - -
Vra1g0491 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 171 IPR013083 -
Vra1g0491 432 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Vra1g0491 432 SUPERFAMILY RING/U-box 99 168 - -
Vra1g0491 432 SMART ring_2 120 161 IPR001841 -
Vra1g0491 432 Pfam Ring finger domain 119 162 IPR001841 -
Vra1g0491 432 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 28 421 - -
Vra1g0491 432 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 28 421 - -
Vra1g0491 432 MobiDBLite consensus disorder prediction 333 363 - -
Vra1g0491 432 CDD RING-H2_PA-TM-RING 119 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0491 Vra-Chr1 5914158 5916753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0491 12 427 C3H Transcription Factor Family AT4G28890 48.090 8.02e-112 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0491 K10664 - gmx:100803207 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0491 1 5914158 5916753 Vra1g0491 1 5914158 5916753 ECH