Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0490 ATGGGTTGCATTTACTCGCGAGTTTGTATAGGTGATAACTGCAGAGGCTCCAGCATCAACGGAGACCCCGTCGTCAGAACCACTGACGTCGGCGAACTGGCCAATTTCTCGCCCACCTCTTCCGACGTTGAAGAAGGTGAAATCAGAGACCAGCTTAACCAATTGAGCATCACGAGGGACTCCGAAGCGGGAATCCGAAGACTGGCTAGGGTTTCGGCGCAGTTCCTGCCGCCGGACGGTTCACGAATCGTTAAAGTGCCTTCTGGGAACTTCGAATTGCGATACTCGTTTTTGTCTCAGCGAGGTTACTATCCCGATGCACTTGATAAAGCGAACCAGGATAGCTTCTGCATCCACACGCCTTTTGGTACGAGTCCTAATGACCACTTTTTTGGTGTGTTCGACGGCCATGGTGAGTTTGGAGCTCAGTGCTCGCAGTTTGTGAAGCGGAAATTGTGTGAGAATTTGCTCAGGAATTCTAAATTCCGTGGTGATCCTGTTGAGGCTTGTCATGCGGCGTTTTTGGCGACGAATTCGCAGCTGCATGCTGATGTTTTGGATGACAGCATGAGCGGGACGACGGCGATCACGGTGCTGGTGAGGGGGAGGACGATATTCGTGGCGAATTCCGGCGATTCGAGGGCGGTGATCGCGGAGAGGAGAGGGAAGGAAATTGTGGCCGTTGATTTGTCGATTGATCAGACGCCGTTTAGGAGTGATGAGCTGGAGAGGGTGAAGCTCTGTGGGGCGAGGGTTCTTACTTTGGATCAGATTGAGGGGTTGAAGAACCCTGATGTGCAGTGTTGGGGCACAGAGGAGGGTGATGATGGTGACCCTCCGAGGTTGTGGGTGCCCAATGGGATGTACCCGGGGACGGCTTTCACAAGGAGTATTGGTGATTCTATCGCGGAGACTATTGGGGTTGTGGCGAATCCTGAGATTGTTGTGTTTGAGCTCACGCAGGATCACCCTTTCTTTGTGCTTGCTAGTGATGGGGTGTTTGAGTTTCTCTCTAGCCAGAGTGTGGTTGAAATGGCTGCAAAATTCAAAGATCCTCGTGATGCTTGTGCTGCAATTGTGGCAGAATCTTATCGACTCTGGCTGCAATATGAAACTCGTACAGATGACATCACAGTCATCATTGTACATGTAAATGGGCTAACTGAATCTACTGTTGCTCAGTCGGCTAGCTATGGTGATGTTTTGCAAAAACCTGTGCCACAAGTCGTAGAGGTGACAGGTTCAGAATCCCCTTCCACCTTTGGCTGGAGTGCTAGAAACCAGCGTGTAAGACATGACTTGTCAAGGGCACGCCTCCGAGCACTTGAAAATTCCCTAGAAAATGGGCAAGCTTGGGTTCCTCCCCCTTCTGCCCATAGAAAGACATGGGAAGAAGAAGCACACATAGAGCAGGCATTGCACGATCATTTTCTCTTCCGAAAACTTACCGATTCTCAGTGCCATGTTCTATTGGATTGCATGCAAAGAGTGGAGGTCGAACCTGGGGATATTATAGTCAAACAGGGTGGTGAAGGTGACTGTTTTTATGTTGTTGGTAGTGGAGAATTTGAGGTCTTGGCAACTCAGGAAGAAAAAGAAGGAGATGTACCTAGGGTTTTGCAGCGCTACACAGCTGAAAAACTCTCATGTTTTGGAGAGCTTGCTCTAATGTACAACAAACCACTCCAGGCTTCTGTACGTGCTGTAACAAAAGGAACTCTTTGGGCTTTAAAACGAGAAGATTTTCGTGGGATTTTAATGTCAGAATTCTCTAACTTATCGTCATTGAAGTTGCTTCGATCTGTAGATCTCCTCTCAAGGTTATCAATTTTACAACTCAGTCAGATTTCTGACTCCCTTTCTGAAGTTTCCTTCTCAAATGGGCAGACAATAATAGACAATAATGAAATCCTTGCATTGTACATTATACAGAAGGGATGTGTAAAAATCACTTTTGATTCTGACTTGTTGACGAGTCCAAATGCCTACAGCCTCAAGCCTGACATCCAAAACGAGGAGGAGGATGTTCAGAGCAGAACAGAACTATCAATAGAGAAGCCCGAGGGAAGCTATTTTGGTGAATGGACCCTTTATGGTGAACGTATTGGTTCCATAAATGCTGTTGCTGTGGGTGATGTTGTATGTGCTTTGCTAACAAAAGACAAATTTGAATCTGTTATTGGCTCCATACAAAAGATTTCTCAGGAAGATCACAAGTCAAAGGATAATTCCATGGAGTTGACTGGAAGAAATTATGATTTTTCATCCCTTGATAAAGTCCAGCTTTCAGATTTGGAGTGGAGAAAGACACTATATTCCACTGACTGTTCCGAAATAGGGGTTGCAAATTTAAAGGAATCAGAAAATTTGCTTACTTTGAAGAGATTTTCTAAGCCAAAGATTAAAAGGCTTGGAAAGGAATCACAAGTCTTGAAAGAGAAAGATTTGATTAAGGGTTTGGGCTCTTCAGCTAGTATACCACAGGTTTTATGCACTTGTGCTGATAGCATGTATGCTGGAATACTGCTAAATACTCACCTTGCTTGCCCTTTGTCTTCCATACTTTCAAGTCCTTTAAGTGAATCAGCCGCACGGTTTTGTGCTGCATCTGTTGTCACTGCTTTAGAAGACTTGCACAAGAATGGTGTTCTCTACAGAGGTGTGTCACCTGATGTTTTGATGTTGGAGCAAACAGGACAGATACAGCTGGTGGACTTCAGATTTGGAAAACAGCTTTCTGGCGAGAGAACATTCACAATTTGTGGGATGGCAGATTCTCTGGCTCCAGAGATTGTTTTGGGAAAAGGCCATGGTTTCCCTGCCGACTGGTGGGCATTGGGGGTTTTAATATATTTTATGTTACGTGGTGAGATGCCATTTGGATCATGGAGAGAAAATGAACTTGATACAGTTGCCAAAATTGCAAAAAGGAAGCTACACCTTCCCGAGAGTTTCAGCTCTGAAACGGTTGATCTTATCTCCAAGCTTCTTGAAGTGGAAGAAAACAATAGACTTGGAAGCCAAGGTCCTGATTCTGTCAAGAGTCACCCATGGTTTAAGGGTATCGATTGGGAAGGGATTAGAAGCCGCACTTTTCCTGTTCCTCAGGAAATTATTTCTCGTATAACACAGTACTTGGAAGTTCATTCTGAGGATTGTAGTACTGGCTATCCGGGCTCGCCTTTGCAGGAGGTAGAAGAACTTAATGTGCCTGAGTGGCTTGAGGACTGGTAG 3234 0.4567 MGCIYSRVCIGDNCRGSSINGDPVVRTTDVGELANFSPTSSDVEEGEIRDQLNQLSITRDSEAGIRRLARVSAQFLPPDGSRIVKVPSGNFELRYSFLSQRGYYPDALDKANQDSFCIHTPFGTSPNDHFFGVFDGHGEFGAQCSQFVKRKLCENLLRNSKFRGDPVEACHAAFLATNSQLHADVLDDSMSGTTAITVLVRGRTIFVANSGDSRAVIAERRGKEIVAVDLSIDQTPFRSDELERVKLCGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVANPEIVVFELTQDHPFFVLASDGVFEFLSSQSVVEMAAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHVNGLTESTVAQSASYGDVLQKPVPQVVEVTGSESPSTFGWSARNQRVRHDLSRARLRALENSLENGQAWVPPPSAHRKTWEEEAHIEQALHDHFLFRKLTDSQCHVLLDCMQRVEVEPGDIIVKQGGEGDCFYVVGSGEFEVLATQEEKEGDVPRVLQRYTAEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILMSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLSEVSFSNGQTIIDNNEILALYIIQKGCVKITFDSDLLTSPNAYSLKPDIQNEEEDVQSRTELSIEKPEGSYFGEWTLYGERIGSINAVAVGDVVCALLTKDKFESVIGSIQKISQEDHKSKDNSMELTGRNYDFSSLDKVQLSDLEWRKTLYSTDCSEIGVANLKESENLLTLKRFSKPKIKRLGKESQVLKEKDLIKGLGSSASIPQVLCTCADSMYAGILLNTHLACPLSSILSSPLSESAARFCAASVVTALEDLHKNGVLYRGVSPDVLMLEQTGQIQLVDFRFGKQLSGERTFTICGMADSLAPEIVLGKGHGFPADWWALGVLIYFMLRGEMPFGSWRENELDTVAKIAKRKLHLPESFSSETVDLISKLLEVEENNRLGSQGPDSVKSHPWFKGIDWEGIRSRTFPVPQEIISRITQYLEVHSEDCSTGYPGSPLQEVEELNVPEWLEDW* 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0490 1077 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 39 1077 - -
Vra1g0490 1077 Gene3D - 89 385 IPR036457 -
Vra1g0490 1077 SUPERFAMILY PP2C-like 82 386 IPR036457 -
Vra1g0490 1077 Gene3D Jelly Rolls 592 745 IPR014710 -
Vra1g0490 1077 Pfam Cyclic nucleotide-binding domain 497 588 IPR000595 -
Vra1g0490 1077 ProSiteProfiles cAMP/cGMP binding motif profile. 604 744 IPR000595 -
Vra1g0490 1077 SMART serkin_6 773 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0490 1077 SUPERFAMILY cAMP-binding domain-like 595 739 IPR018490 -
Vra1g0490 1077 Pfam Protein phosphatase 2C 124 363 IPR001932 -
Vra1g0490 1077 SMART cnmp_10 604 742 IPR000595 -
Vra1g0490 1077 SMART cnmp_10 478 601 IPR000595 -
Vra1g0490 1077 Gene3D Phosphorylase Kinase; domain 1 763 849 - -
Vra1g0490 1077 Gene3D Jelly Rolls 445 586 IPR014710 -
Vra1g0490 1077 SUPERFAMILY Protein kinase-like (PK-like) 750 1050 IPR011009 -
Vra1g0490 1077 Pfam Protein kinase domain 785 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0490 1077 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 39 1077 - -
Vra1g0490 1077 SUPERFAMILY cAMP-binding domain-like 459 588 IPR018490 -
Vra1g0490 1077 ProSiteProfiles PPM-type phosphatase domain profile. 94 384 IPR001932 -
Vra1g0490 1077 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Vra1g0490 1077 SMART PP2C_4 90 382 IPR001932 -
Vra1g0490 1077 CDD PP2Cc 110 384 IPR001932 -
Vra1g0490 1077 Gene3D Transferase(Phosphotransferase) domain 1 850 1035 - -
Vra1g0490 1077 ProSiteProfiles Protein kinase domain profile. 765 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0490 1077 CDD CAP_ED 478 587 IPR000595 -
Vra1g0490 1077 CDD CAP_ED 604 728 IPR000595 -
Vra1g0490 1077 PRINTS cAMP-dependent protein kinase signature 499 513 - -
Vra1g0490 1077 PRINTS cAMP-dependent protein kinase signature 514 528 - -
Vra1g0490 1077 PRINTS cAMP-dependent protein kinase signature 549 558 - -
Vra1g0490 1077 PRINTS cAMP-dependent protein kinase signature 723 735 - -
Vra1g0490 1077 ProSiteProfiles cAMP/cGMP binding motif profile. 478 587 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0490 Vra-Chr1 5903413 5906829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0490 1 1077 PP2C-type Phosphatase Gene Family AT2G20050 68.157 0.0 1508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Vra1g0490 Pkinase 2.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0490 - - gmx:100799821 1970.28