Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0488 ATGGTCGACCCGGCACCATCCTCAGAATCAGAGACAAGAAACGCCGTCAGTTCTGCTTCTTCGCCGTCGTCGTCGTCGTCGACTTCTAAGAAACGAGGAAGACCCAACGACAGCAATGGTAGTAGTAGTAGTAGTAACGACAGCAAGCATTCGGTGTACAGAGGAGTCAGAATGCGGACGTGGGGGAAATGGGTGTCGGAAATCCGCGAGCCGCGAAAAAAGAACCGAATCTGGCTCGGCACCTTCGCCACCGCCGAGATGGCGGCGCGTGCGCACGACGTGGCGGCGCTTACCATAAAGGGCTCCTCGGCCATCCTTAACTTCCCCGAACTCGCCGCCTCGCTGCCGCGCCCCGCTTCCAACTCCCCCCGCGACGTGCAGGCTGCGGCGGCCAAGGCCGCCTCCATGGAGGCGCCGCCTCCTCGGACCCCTCCCTCCCCGACCGCAGCGCCGGAGGACGACCTCGGCGAGATTGTGGAGCTGCCGCCTCTGGGGTCCATCTTCGACTCGCCCGACCCGAATACGGAGTTCGTGTTCCTCGACCCGGATGAAGGGTGGCCCTATCCTCAACCGTGGTTTCACGGCATTTATGACGGTGGGTACTTCATCGGTGACATGAACATGGTTTCAATGCAAGAGTCAGAAAGCATGGTTCTTTCCTTGTGGCCTTGA 672 0.6057 MVDPAPSSESETRNAVSSASSPSSSSSTSKKRGRPNDSNGSSSSSNDSKHSVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALTIKGSSAILNFPELAASLPRPASNSPRDVQAAAAKAASMEAPPPRTPPSPTAAPEDDLGEIVELPPLGSIFDSPDPNTEFVFLDPDEGWPYPQPWFHGIYDGGYFIGDMNMVSMQESESMVLSLWP* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0488 223 SUPERFAMILY DNA-binding domain 51 110 IPR016177 GO:0003677
Vra1g0488 223 MobiDBLite consensus disorder prediction 1 51 - -
Vra1g0488 223 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Vra1g0488 223 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Vra1g0488 223 CDD AP2 51 111 IPR001471 GO:0003700|GO:0006355
Vra1g0488 223 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 8 213 - -
Vra1g0488 223 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Vra1g0488 223 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Vra1g0488 223 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
Vra1g0488 223 MobiDBLite consensus disorder prediction 116 151 - -
Vra1g0488 223 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Vra1g0488 223 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 213 - -
Vra1g0488 223 MobiDBLite consensus disorder prediction 7 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0488 Vra-Chr1 5869351 5870712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0488 16 192 AP2-EREBP Transcription Factor Family AT5G11590 50.500 9.50e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra1g0488 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0488 K09286 - gmx:100804801 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0488 1 5869351 5870712 Vra1g0488 1 5869351 5870712 ECH
Vra7g3274 7 52304929 52306416 Vra1g0488 1 5869351 5870712 PCT