Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0475 ATGGGTTCTCCAGAAAGGGATGAAACTGAGACACAAAAGGTAGAGATGAGAAGAAAAGGGAGAGCTTCCATAGCCATCATTTTGAGATATGCTGATTGGATTGATGTTGTGCTCATGCTAATGGGTGCTTTGGGAGCAATTGGAGATGGCATGTCCACAAATATTTTGCTGCTGTTTGCAAGCCGTATCATGAACAGCCTAGGTTACAGTAATAACCAACAAAGTACTAAGACTTACATGGCTGAGGTTGAAAAGTGCAGCTTATATTTTGTCTACTTGGGATTAGCAGTGATGGTGGTGGCCTTCCTGGAAGGGTATTGCTGGAGCAAAACAAGTGAGAGACAGGTCCTGAGAATTCGTTACAAGTACTTGGAAGCTGTCCTAAGACAAGAAGTAGGGTTTTTCGATTCCCAAGAAGCAACTACTTCTGAAATCATTAACAGCATATCAAAAGACACTTCTCTCATCCAAGAAGTTCTGAGTGAAAAGGTGCCCCTATTTTTGATGCACTCATCATCATTCATATCCGGGGTTGCGTTTGCCGCATATTTTTCTTGGAGGTTGGCCTTAGTAGCATTTCCAACGCTGCTTCTTCTCATCATCCCTGGCATGATTTATGGAAAGTATCTGATCTATTTGTCAAAGTCCTCTGTGAAAGAATATGGCAAAGCAAACAGCATTGTAGAACAGGCACTTAGCTCAGTGAAAACAGTGTATTCATTCACTGCAGAGAAGAGAATCACTGGGAGATATTCAGACATCTTGTGTAGAACTTCAAGGCTTGGAATCAAGCAAGGAATAGCAAAGGGTCTTGCAGTAGGAAGCACTGGTCTCTCTTTTGCAATATGGGCTTTCATTGCTTGGTATGGAAGCCGTTTGGTCATGTACAAAGGTGAAAGTGGTGGAAGGATCTATGCATCAGGCATTTCCTTCATAATGTGTGGACTATCTCTGGGAGTGGTGCTTCCTGATTTGAGGTACTTCACAGAAGCATCTGTTGCAGCATCAAGAATATTTGACATGATTGATCGAATACCATTGATTGATGGTGAAGACACAAAAGGGCTTGTGTTAGATCACATAAATGGGAAGTTAGAGTTTGAGCATGTGAAATTCACATACCCTTCTCGTCCAGATATGGTTGTGCTGAGTGATTTCAATCTGCAAGTGGAAGCAGGGAAAACGGTTGCTCTAGTTGGTGCAAGTGGAAGTGGGAAGTCTACAGCAATAGCATTGATGCAGAGATTTTATGATGCAGATGAAGGTGTTGTGAGGGTTGATGGTGTAGACATAAAAAGGCTTCAATTGAAATGGATAAGAGGGAAAATGGGGCTTGTGAGTCAAGAACATGCAATGTTTGGAACTTCCATAAAAGAGAATATTATGTTTGGGAAAACAGATGCTACCATGGATGAAATAGTAGCAGCAGCCTCAGCAGCCAATGCTCATAACTTCATAAGGCAGCTTCCTGAAGGTTATGAAACTAAGATTGGAGAAAGAGGAGCACTTCTTTCAGGAGGACAAAAACAACGAATAGCCATTGCAAGAGCCATCATAAAGAATCCTGTAATTCTCCTACTTGATGAAGCAACCAGTGCTCTTGACTCTGAATCAGAATTACTGGTCCAGAATGCCCTCGATCAGGCCTCCATGGGGAGGACTACATTGGTTGTTGCACACAAGCTATCAACTATTCGAAATGCAGACATGATAGCAGTTGTCAGTGGTGGTCGAATCATTGAAACCGGCACACACAATGAACTCATGAACAGACCAAATGGTCACTATGCAAACCTGGCAAAGTTACAGACACAATTGAGCATGGATGAGCAAGATCAAAATGCAGAACTAGGTGCTCTTTCAGCAGCAAGAAGCAGTGCAGGTAGACCAAGCACAGCAAGGTCAAGTCCTGCCATATTTCCAAAGTCACCATTGCCTGATGAAGCCAGCAACCCATCTCCAGTTTCTCACCCTCCACCATCTTTCACCAGACTTCTCTTTCTGAATGCTCCTGAATGGAAACAAGGTCTAATTGGGACTCTCTCAGCCATAGCCTTTGGCTCAGTTCAACCACTATATGCTTTAACCATAGGGGGTATGATTTCTGCCTTTTTTGCCAAAAGCCATCTAGAAATGATGCACAGAATCAGGACTTATTCTTTGATTTTCTGTTCCCTTTCCCTTGCCTCTATCACTCTCAATCTCCTGCAACACTACAATTTTGCTTATATGGGAGCCATGTTAACCAAAAGGATAAGACTGCGCATGCTGGAGAATATCTTAACCTTTGAAACTGCTTGGTTTGATGAGGAACAAAACTCCAGTGGAGCATTATGCTCAAGGTTAAGCAATGAGGCTTCCATGGTCAAGTCCCTTGTGGCAGACAGACTCTCTTTAATAGTCCAAACCACTTCTGCTGTCACCATTGCAATGATCATAGGGCTTGCCGTGGCTTGGAAGCTAGCTCTTGTTATGATAGCAGTGCAGCCACTCACAATTCTTTGCTTTTATACAAGAAAAGTGTTGCTCTCCACACTCTCAACAAAATTTGTTAAGGCACAGAATCAAAGTACACAGATTGCCGTGGAGGCAGTTTATAATCACAGAATTGTGACTTCTTTTGGGAGCATTACAAAAGTTTTACGGCTATTTGATGAGGCACAAGAGGCTCCAAGGAAGGAGGCAAGGAAAAAGGCTTGGCTAGCTGGCATAGGAATGGGTTCTGCTCAGTGCCTGACGTTCATGTCATGGGCTTTGGATTTCTGGTATGGTGGTACTTTGGTGGAAAAGAGAGAAATATCAGCTGGGGATGTGTTCAAAACATTTTTTGTGTTGGTGAGCACCGGCAAAGTCATAGCTGATGCTGGAAGCATGACTTCTGACCTTGCCAAGAGTTCAACAGCAGTGGCTTCTGTGTTTGAAATTCTTGACCGAAAATCACTAATTCCTAAGGCTGGGGATAACACTAGCGGCATTAAGTTGGAAAAGATGAGTGGTAAGATAGAGTTGAAGAATGTAGATTTTGCTTATCCAAGCAGGGCAGGAACACCAATTTTGCGCAAGTTTTGCTTGGAGGTGAAGCCAGGAAAAAGTGTCGGGCTTGTCGGAAAAAGTGGATGTGGAAAATCAACAGTGATAGGCTTAATTCAAAGATTCTATGATGTTGAGAGAGGTTCAGTTAAAGTGGATAACGTAGACATAAGGGAATTAGACATTCACTGGTACAGACAGCACACAGCACTAGTGAGCCAAGAACCTGTCATATATTCTGGCAGCATACGTGAGAACATTTTGTTTGGGAAGCAAGATGCAACTGAGAATGAAGTAGTTGAAGCTGCAAGAGCTGCAAATGCTCATGAATTCATATCATCACTGAAAGATGGATATGAAACTGAATGTGGAGAAAGGGGAGTGCAGCTATCAGGAGGGCAAAAGCAGAGAATAGCAATAGCAAGAGCGATAATTCGGAACCCAAAGATACTACTTTTGGATGAGGCAACAAGTGCATTGGATGTGCAATCAGAACAAGTTGTGCAGGAAGCACTTGACAGGACTATGGTAGGAAGAACCACCATTGTTGTGGCACATAGGCTCAACACTATCAAAGAGCTTGATTCAATTGCTTATGTGTGTGAGGGCAAGGTCCTTGAGCAAGGAACCTATGCTCAACTTAGGCACAAGAGAGGTGCCTTCTTCAATCTTGCAAGCCATCAAATCCAAACTTAG 3726 0.4294 MGSPERDETETQKVEMRRKGRASIAIILRYADWIDVVLMLMGALGAIGDGMSTNILLLFASRIMNSLGYSNNQQSTKTYMAEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFDSQEATTSEIINSISKDTSLIQEVLSEKVPLFLMHSSSFISGVAFAAYFSWRLALVAFPTLLLLIIPGMIYGKYLIYLSKSSVKEYGKANSIVEQALSSVKTVYSFTAEKRITGRYSDILCRTSRLGIKQGIAKGLAVGSTGLSFAIWAFIAWYGSRLVMYKGESGGRIYASGISFIMCGLSLGVVLPDLRYFTEASVAASRIFDMIDRIPLIDGEDTKGLVLDHINGKLEFEHVKFTYPSRPDMVVLSDFNLQVEAGKTVALVGASGSGKSTAIALMQRFYDADEGVVRVDGVDIKRLQLKWIRGKMGLVSQEHAMFGTSIKENIMFGKTDATMDEIVAAASAANAHNFIRQLPEGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLVVAHKLSTIRNADMIAVVSGGRIIETGTHNELMNRPNGHYANLAKLQTQLSMDEQDQNAELGALSAARSSAGRPSTARSSPAIFPKSPLPDEASNPSPVSHPPPSFTRLLFLNAPEWKQGLIGTLSAIAFGSVQPLYALTIGGMISAFFAKSHLEMMHRIRTYSLIFCSLSLASITLNLLQHYNFAYMGAMLTKRIRLRMLENILTFETAWFDEEQNSSGALCSRLSNEASMVKSLVADRLSLIVQTTSAVTIAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVKAQNQSTQIAVEAVYNHRIVTSFGSITKVLRLFDEAQEAPRKEARKKAWLAGIGMGSAQCLTFMSWALDFWYGGTLVEKREISAGDVFKTFFVLVSTGKVIADAGSMTSDLAKSSTAVASVFEILDRKSLIPKAGDNTSGIKLEKMSGKIELKNVDFAYPSRAGTPILRKFCLEVKPGKSVGLVGKSGCGKSTVIGLIQRFYDVERGSVKVDNVDIRELDIHWYRQHTALVSQEPVIYSGSIRENILFGKQDATENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQKQRIAIARAIIRNPKILLLDEATSALDVQSEQVVQEALDRTMVGRTTIVVAHRLNTIKELDSIAYVCEGKVLEQGTYAQLRHKRGAFFNLASHQIQT* 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0475 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 603 IPR027417 -
Vra1g0475 1241 SMART AAA_5 392 584 IPR003593 -
Vra1g0475 1241 SMART AAA_5 1028 1220 IPR003593 -
Vra1g0475 1241 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Vra1g0475 1241 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 330 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g0475 1241 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524
Vra1g0475 1241 Gene3D - 355 604 IPR027417 -
Vra1g0475 1241 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 677 964 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g0475 1241 ProSitePatterns ABC transporters family signature. 1140 1154 IPR017871 GO:0005524
Vra1g0475 1241 Gene3D ABC transporter type 1, transmembrane domain 27 904 IPR036640 GO:0005524|GO:0016021
Vra1g0475 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 992 1238 IPR027417 -
Vra1g0475 1241 PANTHER ABC TRANSPORTER B FAMILY MEMBER 8-RELATED 21 1238 - -
Vra1g0475 1241 CDD ABC_MTABC3_MDL1_MDL2 1001 1238 - -
Vra1g0475 1241 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 338 - -
Vra1g0475 1241 Pfam ABC transporter 383 532 IPR003439 GO:0005524
Vra1g0475 1241 Pfam ABC transporter 1022 1168 IPR003439 GO:0005524
Vra1g0475 1241 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 21 1238 IPR039421 -
Vra1g0475 1241 SUPERFAMILY ABC transporter transmembrane region 27 349 IPR036640 GO:0005524|GO:0016021
Vra1g0475 1241 MobiDBLite consensus disorder prediction 620 638 - -
Vra1g0475 1241 Gene3D - 991 1241 IPR027417 -
Vra1g0475 1241 CDD ABC_6TM_Pgp_ABCB1_D2_like 666 982 - -
Vra1g0475 1241 CDD ABC_MTABC3_MDL1_MDL2 366 603 - -
Vra1g0475 1241 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1001 1237 IPR003439 GO:0005524
Vra1g0475 1241 MobiDBLite consensus disorder prediction 620 657 - -
Vra1g0475 1241 Pfam ABC transporter transmembrane region 678 947 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g0475 1241 Pfam ABC transporter transmembrane region 41 312 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g0475 1241 SUPERFAMILY ABC transporter transmembrane region 664 978 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0475 Vra-Chr1 5724412 5733053 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0475 2 1231 Calmodulin-binding Proteins AT2G36910 42.541 0.0 963
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0475 K05658 - gmx:100801088 2215.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0475 1 5724412 5733053 Vra1g0475 1 5724412 5733053 ECH