Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0469 ATGTTTCATAACTGTTCAGTCCAAGTTTATAGTGAAAAATGTCTTCTTTCTCTTCCTTTGCAAATCAACTGCATTTCAGAACCACTGCACAAACACATGACAATACCATTTTACTACTATCTAACCATTTTCCTATTCCTGAGCTGTGTAAACTCTCAGACTCAGCTGCAAGATCAAGAACATGCAGTGTTACTGCAGATAAAACAGCACCTACAAAACCCTTCGTTCCTCAGTCACTGGACCCCTTCAAACACCCGTCACTGCTCCTGGTCAGAGATAACATGCACTGGTGACTCTGTCACTGGATTAACTCTGTTCAACAGAAGTATCAATCAAACACTTCCCGATTTCATGTGTGACCTCAAAAATCTCTCACATGTTAATTTCAGCTTTAATTCCATTCCGGGGGAGTTTCCAACTTTTCTCTATAAATGTTCCAAGCTGGTGTCATTGGACCTTGAAGGGAATGAATTTTCTGGTAGCATTCCTAATGACATAGACAAGTTGGTTAACTTGCAGCATCTTAATCTCGGTTCCACCTGCTTTAGTGGTGATATTCCTGCAAGCATTGGAGGGTTGAAGCAACTGAGATTTCTTCAACTTCACTATTGTCTGTTTAATGGCACTTTTCCTTCTGAGAGTATTGCCAACTTGTTCAATCTTGAATTCTTGGACATATCGTCTAACTTAGCGCTCCCTCCTTCCATGTTCCCATCAGGCCTGACCCAGCTGAAAAAACTGAAGTTCTTGCACATGTACAGTTCAAACTTCTTCGGGGAAATTCCTGATACCATCGGAGAACTGGTGGCTTTAGAGAATTTGGATTTGTCACGAAGCAATTTCAGTGGACGCATTCCCAAAGGCTTGTTCATGCTCAGGAATTTGACCATACTCTACCTCTTCAATAACAGTCTCTCTGGGGAGATTCCTGGTGAGATTGAAGCATTGAATTTGATCGAACTCGATCTTGCACAGAACAATCTCGCAGGGAGAATACCTCAAGATTTTGGGAAGCTTCAAAAGTTAAGATGGTTAAGTTTGTCTCTCAATAACTTGTCAGGGGAGATTCCACAAGGCTTAGGCCGTCTTCCATCTCTCAAACATATTCATATCATGTTCAACAATTTTTCAGGTATTCTTCCTCCTGATTTAGGTCGCTACTCGGAGCTCAAAACATTTCTGGTTGCAAACAATAGTTTCAGTGGAAAGCTCCCGGAGAACTTATGCTATCATGGTCAGTTACAGAATTTATCTGCTTATTGTAATTATCTGAGTGGGAACTTACCAGAGTCACTTGGCCACTGTAGTAGTTTGACTGATGTAAAAATTTATAGCAATGAGTTTTCTGGCAACATTCCTAGTGGTCTTTGGACTCTCAACTTGTCAGATTTCATGGTGAGCAATAACAAGTTCACTGGTGATCTTCCTGAGAGATTTTCCCCAACTATTTCACGCTTGGAGATAAGTCACAACCAGTTTTCTGGTAGGATTCCAACTGGGGTATCTTCATGGACTAACATGGTTGTGTTTAAAGCCAGTGAGAACTACCTCAATGGGAGTGTTCCAAAGGAGTTAACAAATCTTTCCATGCTAACAACTCTATTGCTTGATCATAACCATCTCACAGGGCCACTTCCATCAGATATAATATCATGGAAGTCCCTAGAGAATCTAAATTTGAGCCATAACCAACTCTACGGAAAAATCCCAGATGTAATTTGTCAGTTGCCTGTCCTCAATCAGCTTGACCTGTCAGAAAACCAGTTCACAGGTCAAGTTCCTTCACTACTTCCTAGACTCACTAATCTCAACCTATCCTCTAATCATCTTATAGGGAAGGTTCCATATGAGTTTGAAAACTCTGTGTATTCCACCAGCTTCTTGAACAATCCTGGCCTCTGTGCTGATACCCCAGTACTGAATCTAAGGCTGTGCAGTGTTGGTGCTGGCTTTGAAAAGAGAACCAAAGGCTCTTCTTGGTCTGTTGCTTTGATTCTGTGTCTGGTGGCAGTAGCCTTCTTGTTGGCTTTGCTGATATCAATCTTGATTATCAAACTTTTCAGAAGAGGGAAACATGTGTTGGATAACTCATGGAAACTCGTTTCCTTTCAAAGGTTGAATTTTAACGAATCAGACATACTGTCATCAATGACAGAACAAAATGTTATTGGAAGTGGTGGATTTGGCACAGTGTACCGTGTCCCTGTTGATGGTTTAGACTATATTGCTGTGAAAAAGATCTCAAGCAACAGAAAGTTAGACCGAAAGCTAGAGAGCTCATTTCGTGCAGAAGTGAAAATACTGAGCAACATTCGTCATAAAAACATTGTGAAGTTGTTGTGTTGCATCTCTAATGAGGACTCTATGCTCCTTGTGTATGAGTATTTGGAAAACCGTAGCTTAGACAGGTGGCTGCACAATAAGGACAAATCATCAACTGTGTCGGTTTCAGTCGATCATTTTGTGCTTGACTGGCCAAAGAGATTGAAAATTTCCATTGGGGTTGCTCATGGTCTGTGCTACATGCACCATGATTGCTTTCCACCGATTGTTCACAGAGATGTAAAAACAAGCAACATCCTTTTGGATGCTCAATTCAATGCAAAAGTAGCTGATTTTGGTCTGGCTAGGATGTTAATGAAGCTAGGGGATCTTGCTACCATGTCTTCAGTGGTTGGCTCATTTGGCTACATGGCTCCAGAGTGGGCATGGCGTCAGATTATTGTGGGAAGCAAGATAGAAGAGCTGCTAGACAATGATTTCATGGATCCAAGTTACAGAAATGAAATGTGCAGTGTTTTCAAAGTTGGTGTCTTGTGCACTTCCACACTTCCTGCTAATAGGCCTTCCATGAAAGAGGTGCTACACATGTTGGTCACCATAGGAGAAGGATTTGCTTTTGGAGAGGGGAATGTTAGGCACTTTGATGGTGTTCCTCTTCTTAAGAATTCAAGATGGGAGTGTAGGTTTGATGATGTTATTGATAATGATAGTGATTAG 3000 0.4127 MFHNCSVQVYSEKCLLSLPLQINCISEPLHKHMTIPFYYYLTIFLFLSCVNSQTQLQDQEHAVLLQIKQHLQNPSFLSHWTPSNTRHCSWSEITCTGDSVTGLTLFNRSINQTLPDFMCDLKNLSHVNFSFNSIPGEFPTFLYKCSKLVSLDLEGNEFSGSIPNDIDKLVNLQHLNLGSTCFSGDIPASIGGLKQLRFLQLHYCLFNGTFPSESIANLFNLEFLDISSNLALPPSMFPSGLTQLKKLKFLHMYSSNFFGEIPDTIGELVALENLDLSRSNFSGRIPKGLFMLRNLTILYLFNNSLSGEIPGEIEALNLIELDLAQNNLAGRIPQDFGKLQKLRWLSLSLNNLSGEIPQGLGRLPSLKHIHIMFNNFSGILPPDLGRYSELKTFLVANNSFSGKLPENLCYHGQLQNLSAYCNYLSGNLPESLGHCSSLTDVKIYSNEFSGNIPSGLWTLNLSDFMVSNNKFTGDLPERFSPTISRLEISHNQFSGRIPTGVSSWTNMVVFKASENYLNGSVPKELTNLSMLTTLLLDHNHLTGPLPSDIISWKSLENLNLSHNQLYGKIPDVICQLPVLNQLDLSENQFTGQVPSLLPRLTNLNLSSNHLIGKVPYEFENSVYSTSFLNNPGLCADTPVLNLRLCSVGAGFEKRTKGSSWSVALILCLVAVAFLLALLISILIIKLFRRGKHVLDNSWKLVSFQRLNFNESDILSSMTEQNVIGSGGFGTVYRVPVDGLDYIAVKKISSNRKLDRKLESSFRAEVKILSNIRHKNIVKLLCCISNEDSMLLVYEYLENRSLDRWLHNKDKSSTVSVSVDHFVLDWPKRLKISIGVAHGLCYMHHDCFPPIVHRDVKTSNILLDAQFNAKVADFGLARMLMKLGDLATMSSVVGSFGYMAPEWAWRQIIVGSKIEELLDNDFMDPSYRNEMCSVFKVGVLCTSTLPANRPSMKEVLHMLVTIGEGFAFGEGNVRHFDGVPLLKNSRWECRFDDVIDNDSD* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0469 999 Gene3D Ribonuclease Inhibitor 169 237 IPR032675 -
Vra1g0469 999 Gene3D Ribonuclease Inhibitor 239 361 IPR032675 -
Vra1g0469 999 Gene3D Ribonuclease Inhibitor 58 168 IPR032675 -
Vra1g0469 999 Pfam Protein kinase domain 719 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0469 999 ProSiteProfiles Protein kinase domain profile. 717 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0469 999 Gene3D Transferase(Phosphotransferase) domain 1 707 964 - -
Vra1g0469 999 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 38 902 - -
Vra1g0469 999 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 901 989 - -
Vra1g0469 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 850 862 IPR008271 GO:0004672|GO:0006468
Vra1g0469 999 Pfam Leucine Rich Repeat 171 193 IPR001611 GO:0005515
Vra1g0469 999 Pfam Leucine Rich Repeat 147 169 IPR001611 GO:0005515
Vra1g0469 999 SMART serkin_6 717 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0469 999 SUPERFAMILY L domain-like 67 401 - -
Vra1g0469 999 Gene3D Ribonuclease Inhibitor 362 643 IPR032675 -
Vra1g0469 999 ProSiteProfiles Leucine-rich repeat profile. 554 576 IPR001611 GO:0005515
Vra1g0469 999 SUPERFAMILY Protein kinase-like (PK-like) 712 959 IPR011009 -
Vra1g0469 999 SMART LRR_typ_2 597 620 IPR003591 -
Vra1g0469 999 SMART LRR_typ_2 218 239 IPR003591 -
Vra1g0469 999 SMART LRR_typ_2 553 576 IPR003591 -
Vra1g0469 999 SMART LRR_typ_2 292 316 IPR003591 -
Vra1g0469 999 SMART LRR_typ_2 169 193 IPR003591 -
Vra1g0469 999 SMART LRR_typ_2 339 363 IPR003591 -
Vra1g0469 999 SMART LRR_typ_2 528 552 IPR003591 -
Vra1g0469 999 ProSitePatterns Protein kinases ATP-binding region signature. 723 746 IPR017441 GO:0005524
Vra1g0469 999 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 38 902 - -
Vra1g0469 999 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 901 989 - -
Vra1g0469 999 Pfam Leucine rich repeat N-terminal domain 58 95 IPR013210 -
Vra1g0469 999 Pfam Leucine rich repeat 317 376 IPR001611 GO:0005515
Vra1g0469 999 SUPERFAMILY RNI-like 317 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0469 Vra-Chr1 5678762 5682400 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0469 54 962 Receptor kinase-like Gene Family AT5G25930 46.202 0.0 804
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra1g0469 Pkinase 1.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0469 - - gmx:100819744 1467.6