Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0468 ATGAAACTCTTCACCCCATCATCATCATCATCATCATCATCATATATTAAACTGCTACTTCAGTCTATTGTGATCTTACTCCTGGTTTTTACTCGTGCAAACTCTGAGTCTCAATCTCAGTTGCATGATCAAGAACATGCAATCTTACTGAGGATAAAGCAGTACCTTGAAAACTCTTCATATCTCAGTCACTGGACATCATCAAACATCTCTCACTGCTCTTGGCCAGAGATAACGTGCAGCAACGATGATTCTGTCACTGGGTTGACATTGTCCAACAATAGCATCTTTCAGACCATACCCTCTTTCATATGTGACCTCAAAAACCTCACACACGTTGATTTCTACAACAATCTGATTCCTGGGGAGTTCCCAACACATCTCCTCAATTGCTCCAAGTTGGAGTACCTAGACCTGTCTATGAACAACTTTGTTGGCAGCATCCCTCGTGACATTGGCAACTTATCTAATCTGCAGTTTCTTAACCTTGGTTACACCAATTTCTCTGGTGACATTCCTTCTAGCATTGGAAGTCTAAAGCAGCTCACAAATCTTCAACTTCAGAATTGCCTATTCAATGGAAGTATCCCCTCTGAGATTGGCAACTTGTCCAATCTTGAATTCTTGGATTTGTCATCTAACTCCTTGTTCCCTCCTTCGAGGTTGCATGATAACTGGATGCGGTTGAGCAAGTTGAAGTTCTTTTTCATGTTTGACTGCAACTTGGTTGGGGAGATCCCTGAAACCATTGGAAACATGGTGGCTTTGGAGAGATTGGATCTATCGCAGAACGATTTAAGTGGTGAAATTCCCGGGGGTTTGTTCATGCTGAAGAATCTGAACATAATATTTCTATCTAGAAACAAGCTTTCTGGGGAAATACCTGATGTGGTTGAAGCACTGAATTTGACCATCATTGATCTACCGCAAAATTCTCTCTCAGGAAAAATACCAGATGGTTTTGGAAAGCTTCAAAATTTAACTGGTTTGGCTTTGTCTTTAAATAACTTACATGGGGAGATACCACAGAGCATAGGCCTTCTTCCATCTCTGATAGATTTTAAAGTGTTTTCCAACAATTTATCAGGTACTCTTCCTCCTGACTTTGGCCGCCACTCAATGCTTAAAACCTTTTTGATTTCAAATAATAGTTTTACTGGAAAGCTACCCGAGAACTTGTGCTATAATGGTCACTTGGAAAACTTAACTACCTATGAAAATCATCTCAGTGGGGAGTTGCCACAATCACTTGGTAATTGTAGCAGCTTGACAGATCTGAAAATTTATAGTAACCAGTTTTCTGGTAGCATTCCAAGTGGTCTTTGGACTTTCAATTTGTCAACTTTCATGGTGAGCCATAACAATTTCACTGGTGAGCTTCCTGAGAGATTGTCCTCAACTATTTCGCGGTTGGAGATAGATTACAATCAGTTTTATGGTAGGATTCCAACTGGGGTGTCTTCATGGACTAATGTGGTTGTGTTTCAAGCCAGTAAGAACAACCTTAATGAGAGTATTCCAAGAGAGTTAACAGCTCTTCCCATGCTAACAACACTATTGCTTGATCAAAACCAGCTCACAGGGTCACTTCCGTCTGATATAATATCATGGAAATCCCTTAGGAATCTAAATTTGCGACAAAACCAACTCTCTGGACATATTCCTGATTCAATTGGTCATTTACCTAATCTCAACCAACTTGATCTGTCAGAAAATCAGTTCTCGGGTCAAATTCCTTCTCTTCCTTCCAGACTCACCAATCTCAATCTTTCCTCCAATTATTTGACAGGGAGGGTTCCAAGTACTTTTGAAAATTCTGCTTTTGAAACTAGCTTTTTGAACAATTCTGACCTCTGTTCTGATACCCCAGCACTGAATCTCACGTCGTGTAATCATAGCCCTCAAAGTGAAAGCAATGACTCATCTTGGTCTGTTGCTTTGATCATAAGTTTGGTGGTAGTGGCCTGTTTCCTGGCTTTGTTGGCATTGTTCTTGAGCATCAGATTTTACAGAAAAAGAAAGAGTGGATTGGATAGGTCATGGAAGCTCATTTCTTTCCAAAGGCTGAGTTTCACTGAATCAAACATAGTGTCATCATTGACAGAAAATAATATTATTGGCAGTGGTGGCTATGGTGCAGTATACCGCGCTGCAGTTGATGGTTTAGGCTATGTTGCTGTCAAGAAGATATGGGACAGTAAAAAGATAGACAAGAAGCTTGAGAGCTCATTTCACACTGAAGTTAAAATATTGAGCAGCATTCGTCACAAAAACATTGTGAAGTTGATGTGTTGTATCTCTAAAGAGGACTCTATGCTCCTTGTGTATGAGTATGTGGAAAACCACAGCCTTGACAGGTGGTTGCACAGGAAGAATAAGTCATCATCAGCTGTTTCAGGTTCACTCCATCATGTTGCCCTTGATTGGCCAAAGAGATTGCATATAGCAATTGGAACTGCACAAGGTTTGAGCTACATGCATCATGATTGTTCGCCACCTATTGTTCATCGAGATGTGAAAACAAGCAACATTCTTTTGGATGATCAATTCAATGCAAAAGTTGCTGATTTTGGTTTGGCCAGGATCTTGATGAAACCAGGGGAACTTGCCACCATGTCAGCTGTGATTGGATCATTTGGCTATATGGCTCCAGAATATATTCAAACAACTCGAGTAAGTGAAAAGATTGATGTGTTCAGCTTTGGGGTAATCCTATTGGAACTTACAACTGGCAAAGAAGCTAATTATGGTGATGAGCACTCATCTCTTGCAGAGTGGGCGTGGCGTCACCATCAATTAGGAAGCAACATAGAAGAGCTGCTAGATAAAGAAGTCATGGAATCCAGTTACTCAGGTGAAATGTGTAAGGTTTTCAAACTAGGTCTCATGTGCACTGCAACACTTCCTTCTACTAGACCATCCATGAAAGAGGTTCTACAAGTTTTGCTTTCTTGTGAAGAATCATTTTCTAAGGGAGAGAGTAATATTGGCCACTGTGATGATGTTGTTCCCTTTCTTAAAAATTCAAGAAGAGAGCACAAGTTGGATATTGATATTGATAGCTAG 3066 0.4031 MKLFTPSSSSSSSSYIKLLLQSIVILLLVFTRANSESQSQLHDQEHAILLRIKQYLENSSYLSHWTSSNISHCSWPEITCSNDDSVTGLTLSNNSIFQTIPSFICDLKNLTHVDFYNNLIPGEFPTHLLNCSKLEYLDLSMNNFVGSIPRDIGNLSNLQFLNLGYTNFSGDIPSSIGSLKQLTNLQLQNCLFNGSIPSEIGNLSNLEFLDLSSNSLFPPSRLHDNWMRLSKLKFFFMFDCNLVGEIPETIGNMVALERLDLSQNDLSGEIPGGLFMLKNLNIIFLSRNKLSGEIPDVVEALNLTIIDLPQNSLSGKIPDGFGKLQNLTGLALSLNNLHGEIPQSIGLLPSLIDFKVFSNNLSGTLPPDFGRHSMLKTFLISNNSFTGKLPENLCYNGHLENLTTYENHLSGELPQSLGNCSSLTDLKIYSNQFSGSIPSGLWTFNLSTFMVSHNNFTGELPERLSSTISRLEIDYNQFYGRIPTGVSSWTNVVVFQASKNNLNESIPRELTALPMLTTLLLDQNQLTGSLPSDIISWKSLRNLNLRQNQLSGHIPDSIGHLPNLNQLDLSENQFSGQIPSLPSRLTNLNLSSNYLTGRVPSTFENSAFETSFLNNSDLCSDTPALNLTSCNHSPQSESNDSSWSVALIISLVVVACFLALLALFLSIRFYRKRKSGLDRSWKLISFQRLSFTESNIVSSLTENNIIGSGGYGAVYRAAVDGLGYVAVKKIWDSKKIDKKLESSFHTEVKILSSIRHKNIVKLMCCISKEDSMLLVYEYVENHSLDRWLHRKNKSSSAVSGSLHHVALDWPKRLHIAIGTAQGLSYMHHDCSPPIVHRDVKTSNILLDDQFNAKVADFGLARILMKPGELATMSAVIGSFGYMAPEYIQTTRVSEKIDVFSFGVILLELTTGKEANYGDEHSSLAEWAWRHHQLGSNIEELLDKEVMESSYSGEMCKVFKLGLMCTATLPSTRPSMKEVLQVLLSCEESFSKGESNIGHCDDVVPFLKNSRREHKLDIDIDS* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0468 1021 Gene3D Ribonuclease Inhibitor 299 371 IPR032675 -
Vra1g0468 1021 Pfam Leucine rich repeat N-terminal domain 43 81 IPR013210 -
Vra1g0468 1021 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 20 1014 - -
Vra1g0468 1021 SMART serkin_6 700 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0468 1021 SUPERFAMILY L domain-like 47 299 - -
Vra1g0468 1021 Gene3D Ribonuclease Inhibitor 41 190 IPR032675 -
Vra1g0468 1021 Gene3D Phosphorylase Kinase; domain 1 677 778 - -
Vra1g0468 1021 Gene3D Ribonuclease Inhibitor 372 639 IPR032675 -
Vra1g0468 1021 Pfam Protein kinase domain 702 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0468 1021 Gene3D Transferase(Phosphotransferase) domain 1 779 1001 - -
Vra1g0468 1021 SUPERFAMILY RNI-like 301 605 - -
Vra1g0468 1021 ProSitePatterns Serine/Threonine protein kinases active-site signature. 834 846 IPR008271 GO:0004672|GO:0006468
Vra1g0468 1021 Gene3D Ribonuclease Inhibitor 191 298 IPR032675 -
Vra1g0468 1021 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 20 1014 - -
Vra1g0468 1021 ProSiteProfiles Protein kinase domain profile. 700 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0468 1021 SMART LRR_typ_2 513 537 IPR003591 -
Vra1g0468 1021 SMART LRR_typ_2 203 229 IPR003591 -
Vra1g0468 1021 SMART LRR_typ_2 253 277 IPR003591 -
Vra1g0468 1021 SMART LRR_typ_2 561 588 IPR003591 -
Vra1g0468 1021 SMART LRR_typ_2 324 348 IPR003591 -
Vra1g0468 1021 SMART LRR_typ_2 155 179 IPR003591 -
Vra1g0468 1021 SMART LRR_typ_2 107 131 IPR003591 -
Vra1g0468 1021 CDD STKc_IRAK 706 982 - -
Vra1g0468 1021 ProSitePatterns Protein kinases ATP-binding region signature. 706 729 IPR017441 GO:0005524
Vra1g0468 1021 SUPERFAMILY Protein kinase-like (PK-like) 693 982 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0468 Vra-Chr1 5670021 5674190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0468 39 982 Receptor kinase-like Gene Family AT5G25930 50.577 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra1g0468 Pkinase 1.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0468 - - gmx:100798963 1614.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0468 1 5670021 5674190 Vra1g0468 1 5670021 5674190 ECH