Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0467 ATGAAAAAATTCACCTCATCATGTGTCAAAATGCCAATCCTCTCTCTTCTCTCCTTCCTCTTTCTGATCTTTGCAAACTCTCAGTCTCACTCTTTGATGTATGATGAAGAGCATGCAGTCCTATTGAGGATAAAACAATACCTGCAAAATCCACCGTTTCTCAATCACTGGATCCCATCAAACTCCTCACATTGCACTTGGCCGGAGATCACATGCATCAATGGCTCAGTCACTTCACTGACTATGTACAACACTAACATCACTCAAACACTGCCACATTTCTTATGTGACCTCAAAAACCTCACACATGTAGATTTTCAGTTGAATTTCCTTCCTGGGGAGTTCCCGAAATCTCTCTACAACTGCTCCAAGCTTGAGTACCTTGACCTCTCACAGAACCTCTTCGTTGGTAAGATTCCTGATGACATTGACCACTTGGATGGCTTGCGTTTTCTTAGCCTTGGTGGCAACAACTTCTCTGGTGATATTCCAGCCAGCATGGGGAGGTTGAAGGAGCTACGAAGCCTTCAACTTCATCAGTGTCTTTTCAATGGTACTTTCCCTGCTGAAATTGGGAATTTGTCCAACCTTGAGGAGTTGTATGTGTTCTCAAACCACATGTTCCCTCCTACAAAGTTTCCATCAAGCTTGACCCAGTTGAGCAAATTGAAGATCTTTTATATGCAGGAATCCAACTTGGTAGGGGAAATCCCCGAAACCATTGGAAACATGGTGGCATTGGAGGAATTGGATTTGTCCGTAAACGATTTGAGTGGAGAAATTCCCAAAAGTTTGTTCATGCTGAAAAACCTGAGCAAACTATATATTTACAAGAACAGCCTCTCTGGGGAGATACCTGAAGTGGTTGAAGCATTCAACTTGACAGAACTTGATCTTTCATACAATAATCTTAGTGGGAAAATACCAGATGATTTGGGAAAGCTCAGCAAGTTAATATTTTTGTCTCTGTCTACTAACCAATTATCAGGGAAGGTACCAGAAAGCATTGGTAGTCTGCCAGCTCTGACTGATTTTGTTGTTTTTCACAACAATTTATCAGGCACTCTTCCACCAGATTTCGGTCGGATCTCAAAGCTTGAAACTTTTCAGGTTGCATCTAATAGTTTCACAGGAAATTTGCCAGAGAACTTGTGCTACCATGGAAGGTTAGTTGGTTTAACTGCTTTCGACAATAACCTGAGAGGGGAGTTGCCAGAATCTTTAGGAAGTTGCAGTAGCCTGCAAATTCTGAGCGTTGAAAACAATGAACTTTTTGGCGACATTCCTAGTGGTCTATGGACATCTTCTAATATACAAACCATTAAGATAAACGAAAACAAGTTCACTGGTCAGCTTCCTGAAAGATTGTCCGAGAATCTTTCAGACATAGGCATAGGTTACAATCAGTTTTCTGGTAGAATTCCACATGGAGTGTCTTCCTGGAAGAATCTTGTGAAATTTAATGCCAGTAACAACCTCTTCAATGGTAGTATTCCACTGGAGCTAACATCTCTTCCTGACCTAACAATTCTTCTGCTTGATCATAACCAGTTCACAGGACCACTTCCTTCAGATATAATATCATGGAAGTCCCTGATAAATCTAGATTTGAGCCACAATCAACTCTCTGGAGAAATCCCTCTTTCAATTGCCCAGTTGCCTGCCCTTAATATTTTGGATTTATCAGAGAACAGAATATCTGGCCAAATTCCACATCAACTAGCTCTTAAGAGACCCACAAATATCAATCTGTCCTCCAATAGTTTGGTAGGAAGGATTCCAAGTGAATTTGAAAATCTTGTTTATGCTAGCAGCTTTTTGAACAATCCTGGTCTCTGTGCTGACACTCCAGTACTAAACCTTATCTTATGCAATTCCAGGCCTCAAAGGGCAAAAATTGATAGAAGATATGCATCTCATGTTATAATCATAAGCCTGGTGGTAGCAGCCTCCTTGCTGGCTTTGTTGTCGTTATTTTTGATGATCAGAGTTTACAGAAAAAGAAAGCAGGAACTGAAAAGGTCATGGAAGCTCACTTCCTTTCAAAGGCTCAGTTTCACAAAAGGAAATATTGTGTCCTCAATGTCAGAACACAATATTATTGGCAGTGGTGGGTATGGTGCAGTATATCGTGTCGCTGTTGGTGATACAAACTATGTCGCAGTGAAGAAGATACTCAGTAACAGAAAGTTAGAGGAGAAGCTTGTAAGTTCATTTCTTGCAGAAGTTGAGATACTGAGCAATATTCGTCATAACAACATTGTGAAGTTGCTATGCTGCGTCTCCAAAGAGGATTCTCTTCTCCTTGTCTACGAGTATCTTGAAAACCATAGCCTTGATAGATGGCTGCACAACAAAAGTAAGCAGACAGCTTCAGGTTCAGTCCTTGACTGGCCAAAGAGATTACATATAGCCATTGGAGCCGCTCAAGGTTTGTGCTATATGCATCATGACTGCTTACCACCCGTTGTTCATCGTGATGTGAAAACAAGTAACATTCTGCTGGATTCTAAATTCAATGCCAAAGTTGCTGATTTTGGTCTGGCCATGATGTTGATGAAGCCAGAAGAACTTGCAACCATGTCAGCTGTGGCTGGCACATTTGGCTATATTGCTCCAGAATATGCTCAAACAACAAGGGTCAATGAGAAGATAGATGTCTATAGCTTTGGAGTAGTCCTATTGGAACTGACAACAGGAAAAGAAGCTAATCATGGAGATGAGTACTCATCTCTGGCAGAATGGGCGTGGCGCCACATTCAGGTAGGAACAGATGTAGAAGATATTTTGGACAAAGAAATTAAGGAAGCTTGTTACATGGATGAAATCTGCAACATCTTCAAACTTGGGGTGATGTGCACTGCAACACTTCCAGCTAGTAGACCTTCCATGAAGGAAGTCCTGAAAATTTTGCTCAGCTGCAGCAGTCCACTCAGCATTGGAGACAAGAATGTTGGCTTCTATGATTCTGCTCCACTTCTTAAGAATTCAAAATGGGAAAATAATATGGAATATTATACCGATGATGATTGA 3033 0.4108 MKKFTSSCVKMPILSLLSFLFLIFANSQSHSLMYDEEHAVLLRIKQYLQNPPFLNHWIPSNSSHCTWPEITCINGSVTSLTMYNTNITQTLPHFLCDLKNLTHVDFQLNFLPGEFPKSLYNCSKLEYLDLSQNLFVGKIPDDIDHLDGLRFLSLGGNNFSGDIPASMGRLKELRSLQLHQCLFNGTFPAEIGNLSNLEELYVFSNHMFPPTKFPSSLTQLSKLKIFYMQESNLVGEIPETIGNMVALEELDLSVNDLSGEIPKSLFMLKNLSKLYIYKNSLSGEIPEVVEAFNLTELDLSYNNLSGKIPDDLGKLSKLIFLSLSTNQLSGKVPESIGSLPALTDFVVFHNNLSGTLPPDFGRISKLETFQVASNSFTGNLPENLCYHGRLVGLTAFDNNLRGELPESLGSCSSLQILSVENNELFGDIPSGLWTSSNIQTIKINENKFTGQLPERLSENLSDIGIGYNQFSGRIPHGVSSWKNLVKFNASNNLFNGSIPLELTSLPDLTILLLDHNQFTGPLPSDIISWKSLINLDLSHNQLSGEIPLSIAQLPALNILDLSENRISGQIPHQLALKRPTNINLSSNSLVGRIPSEFENLVYASSFLNNPGLCADTPVLNLILCNSRPQRAKIDRRYASHVIIISLVVAASLLALLSLFLMIRVYRKRKQELKRSWKLTSFQRLSFTKGNIVSSMSEHNIIGSGGYGAVYRVAVGDTNYVAVKKILSNRKLEEKLVSSFLAEVEILSNIRHNNIVKLLCCVSKEDSLLLVYEYLENHSLDRWLHNKSKQTASGSVLDWPKRLHIAIGAAQGLCYMHHDCLPPVVHRDVKTSNILLDSKFNAKVADFGLAMMLMKPEELATMSAVAGTFGYIAPEYAQTTRVNEKIDVYSFGVVLLELTTGKEANHGDEYSSLAEWAWRHIQVGTDVEDILDKEIKEACYMDEICNIFKLGVMCTATLPASRPSMKEVLKILLSCSSPLSIGDKNVGFYDSAPLLKNSKWENNMEYYTDDD* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0467 1010 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Vra1g0467 1010 ProSiteProfiles Protein kinase domain profile. 695 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0467 1010 SUPERFAMILY Protein kinase-like (PK-like) 688 971 IPR011009 -
Vra1g0467 1010 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 14 1002 - -
Vra1g0467 1010 Gene3D Ribonuclease Inhibitor 33 211 IPR032675 -
Vra1g0467 1010 SUPERFAMILY L domain-like 44 377 - -
Vra1g0467 1010 Pfam Protein kinase domain 697 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0467 1010 SMART LRR_typ_2 505 529 IPR003591 -
Vra1g0467 1010 SMART LRR_typ_2 553 577 IPR003591 -
Vra1g0467 1010 SMART LRR_typ_2 244 268 IPR003591 -
Vra1g0467 1010 SMART LRR_typ_2 315 339 IPR003591 -
Vra1g0467 1010 SMART LRR_typ_2 146 170 IPR003591 -
Vra1g0467 1010 SMART LRR_typ_2 194 220 IPR003591 -
Vra1g0467 1010 ProSitePatterns Protein kinases ATP-binding region signature. 701 724 IPR017441 GO:0005524
Vra1g0467 1010 SMART serkin_6 695 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0467 1010 SUPERFAMILY RNI-like 292 600 - -
Vra1g0467 1010 Gene3D Transferase(Phosphotransferase) domain 1 774 981 - -
Vra1g0467 1010 Pfam Leucine rich repeat 100 159 IPR001611 GO:0005515
Vra1g0467 1010 Pfam Leucine rich repeat 293 352 IPR001611 GO:0005515
Vra1g0467 1010 Gene3D Ribonuclease Inhibitor 212 391 IPR032675 -
Vra1g0467 1010 Gene3D Ribonuclease Inhibitor 392 630 IPR032675 -
Vra1g0467 1010 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 14 1002 - -
Vra1g0467 1010 ProSiteProfiles Leucine-rich repeat profile. 293 316 IPR001611 GO:0005515
Vra1g0467 1010 Gene3D Phosphorylase Kinase; domain 1 677 773 - -
Vra1g0467 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672|GO:0006468
Vra1g0467 1010 PRINTS Leucine-rich repeat signature 532 545 - -
Vra1g0467 1010 PRINTS Leucine-rich repeat signature 553 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0467 Vra-Chr1 5664874 5668532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0467 37 971 Receptor kinase-like Gene Family AT5G25930 52.704 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra1g0467 Pkinase 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0467 - - gmx:100785907 1652.49