Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0462 ATGGGGAGAGTCACGAGATGGATGAAGAGTTTGTTTGGAATTTCAGGAGAGAAAGAGAAGAAACAAAACATCATGGAATCTGGTTTTTCTGAGAGTACTTGTAATTCAAGAGTTTTGTGTCACAATCCAGGAACTATACCTCCCAACATTTCTCAAGCTGAGGCAGCTTGGTTGCAGTCATTCTACACAGAGAAGGACAAAAACAAGCACGCCATTGCGGTTGCTGCGGCAACCGCAGCTGCGGCTGATGCTGCTGTGGCGGCAGCACAGGCCGCCGTGGCAGTTGTTAGGCTCACAAGCCAAGGAAGGGGTGGCACCGTGTTTGGCGTTGGACCTGAGATATGGGCTGCTATCAAGATTCAAGCAGTGTTCAGAGGATACCTGGCAAGGAAGGCACTGAGGGCATTAAAAGGATTGGTGAAGTTGCAGGCACTTGTCAGAGGGTATTTAGTGAGGAAGCAAGCAACAGCAACACTGCATAGTATGCAGGCTCTTATTAGAGCTCAAGCTAGAATACGGTCCCACCAATCTCGCAGGCTCATGAGTACGAAGAATGAAGCATTTAGATCTCAAAGTAGAGCAAGAAGATCCGTGGAGAGGTTTGATGATACTAGGAGTGAGTATGGAGTTCCAATCCACAACAGAAGAGCATCATCTTCTTTTGATGCTACACTTAACATCAACAACAGTGTTGATGGGAGCCCCAAAATAGTGGAAGTAGACACTTTCAGGCCTAAGTCAAGATCAAGAAGAACAATATCAGATTTTGGTGATGAGCCATCACTTCAGGCACTTTCCTCACCCTTCTTTCCAATTTCATATAGAGGTACCCCTACAGGTTGGTCCATACCAGATCAAAGGAATTTTCAGGACTCTGAATGGGGGTTAACAGGAGAAGAATGTCGGTTCTCTACAGCACAAAGCACTCCACGCTTCTTCACAAATCCTTGTAGTTGTGACTCCGTTGTACCTATGACACCACAAAGTGTGTGTCCTGATGATAACTTGTTCCTAAGGCAATATGGGAAATTTCCAAACTACATGGCTAGTACTCAGTCTTTTAAGGCCAAGTTGAGGTCTCATAGTGCTCCAAAGCAACGACCTGAACCAAGTCCAAGGAAAAGGCTCTCCCTCAATGAAATGATGGAGTCTAGGAATAGCTTGAGTGGTGTTAGAATGCAGAGGTCTTGCTCAAAGGCTCAAGAAGTCATTAATTTCAAGAATGCTGTGATGGGAAAGCTTCAGAAATCCACAGAATCTGTTAGGGAAACAGATAGAAACTATTTCCACCAGAGAGGATGGTGA 1305 0.4529 MGRVTRWMKSLFGISGEKEKKQNIMESGFSESTCNSRVLCHNPGTIPPNISQAEAAWLQSFYTEKDKNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGGTVFGVGPEIWAAIKIQAVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQARIRSHQSRRLMSTKNEAFRSQSRARRSVERFDDTRSEYGVPIHNRRASSSFDATLNINNSVDGSPKIVEVDTFRPKSRSRRTISDFGDEPSLQALSSPFFPISYRGTPTGWSIPDQRNFQDSEWGLTGEECRFSTAQSTPRFFTNPCSCDSVVPMTPQSVCPDDNLFLRQYGKFPNYMASTQSFKAKLRSHSAPKQRPEPSPRKRLSLNEMMESRNSLSGVRMQRSCSKAQEVINFKNAVMGKLQKSTESVRETDRNYFHQRGW* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0462 434 Pfam Protein of unknown function (DUF4005) 309 392 IPR025064 -
Vra1g0462 434 PANTHER IQ-DOMAIN 5-RELATED 1 418 - -
Vra1g0462 434 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 418 - -
Vra1g0462 434 SMART iq_5 135 156 IPR000048 GO:0005515
Vra1g0462 434 SMART iq_5 112 134 IPR000048 GO:0005515
Vra1g0462 434 Gene3D - 68 138 - -
Vra1g0462 434 ProSiteProfiles IQ motif profile. 116 141 IPR000048 GO:0005515
Vra1g0462 434 Pfam IQ calmodulin-binding motif 115 134 IPR000048 GO:0005515
Vra1g0462 434 Pfam IQ calmodulin-binding motif 140 154 IPR000048 GO:0005515
Vra1g0462 434 ProSiteProfiles IQ motif profile. 137 164 IPR000048 GO:0005515
Vra1g0462 434 ProSiteProfiles IQ motif profile. 161 190 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0462 Vra-Chr1 5620305 5622716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0462 1 393 IQD Protein Family AT3G16490 50.248 3.09e-90 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0462 - - gmx:100788710 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0462 1 5620305 5622716 Vra1g0462 1 5620305 5622716 ECH