Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0461 ATGTCAAACTTGCATTACTTGTTCATCTTTTTAGCAGTTGTTCTTGTTTTTCTGCAAAATCCCAGTAGAGTACATTGCCATACCAAGGGAATTAGACCAAGACGTTCTGCGGGTAAAGGGTTATTGACCAACATGACTAGAGTGCAGTATTCTGAAGAGCAATTCATGAAATGGGTGAACTTTGTTGGTTCCCTCAAACACTCAGTTTTTAAGGCAGCCAAAAATAAGCTTGTGGCTTCCTACACTTTGCACGTTGATAAGAATCCTAGTGCTGGAGATTTTACCTCAATTCAAGAAGCCATCGATTCCCTTCCATTCGTCAATCTTGTGAGAGTGCTCATAAAAGTCCATGCAGGTGTCTACACGGAGAAGGTTAACATTCCTGCTTTCAAATCCTACATAACAATAGAGGGAGATGGTGCAGATGAAACCATTGTTAAATGGAGTGACACTGCTCAAACACCTGGTTCAAATGGGAGGCCACTAGGAACCTATGGTTCAGCAACTTTTGCTGTGAATTCGCCTTATTTCATTGCCAAGAACATCACATTCCAAAACACAACTCCTGTTCCTGCACCAGGAGCAATCGGAAAGCAAGCGGTAGCATTAAGGATTTCAGCAGACACAGCAGCATTCGTAGGCTGCAAATTCTTAGGAGCACAAGACACACTCTATGATCATGTGGGCAGACATTACTATAAAGATTGTTACATTGAAGGCTCTGTTGATTTCATATTCGGCAACTCTCTCTCACTATTTGAGGGATGTCACGTGCATGCGATAGCACAGAGCACGGGGGCAGTAACAGCTCAAGGAAGGAGTAGTATGTTGGAGGACACAGGGTTCTCATTTGTGAACTGTAAGGTCACGGGATCAGGGGCACTATACCTTGGAAGGGCATGGGGACCCTTTTCTCGCGTGGTCTTTGCATACACGTATATGGACAACATCATCATTCCCAAAGGCTGGTATAACTGGGGTGACCCTAACCGTGAAACAACTGTTTTCTATGGGCAGTACAAGTGCACAGGACCTGGTGCAAGTTTTGCAGGGAGAGTTTCATGGTCAAGAGAACTCACTGATGAGGAAGCTACACCTTTTCTGTCACTTAGCTTTATTGATGGGACTGAATGGATCCAACTGTAG 1146 0.4415 MSNLHYLFIFLAVVLVFLQNPSRVHCHTKGIRPRRSAGKGLLTNMTRVQYSEEQFMKWVNFVGSLKHSVFKAAKNKLVASYTLHVDKNPSAGDFTSIQEAIDSLPFVNLVRVLIKVHAGVYTEKVNIPAFKSYITIEGDGADETIVKWSDTAQTPGSNGRPLGTYGSATFAVNSPYFIAKNITFQNTTPVPAPGAIGKQAVALRISADTAAFVGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNSLSLFEGCHVHAIAQSTGAVTAQGRSSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNRETTVFYGQYKCTGPGASFAGRVSWSRELTDEEATPFLSLSFIDGTEWIQL* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0461 381 Gene3D - 78 381 IPR012334 -
Vra1g0461 381 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 6 380 - -
Vra1g0461 381 PANTHER PECTINESTERASE 6 380 - -
Vra1g0461 381 SUPERFAMILY Pectin lyase-like 78 380 IPR011050 -
Vra1g0461 381 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Vra1g0461 381 Pfam Pectinesterase 91 375 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0461 Vra-Chr1 5612874 5617193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0461 94 379 Carbohydrate Esterase AT5G47500 51.220 2.68e-103 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0461 K01051 - gmx:100817924 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0461 1 5612874 5617193 Vra1g0461 1 5612874 5617193 ECH