Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0459 ATGGGAAACAAAATCGCGCGCACGACGCAGGTTTCGGCGTCGGAGTATTACCTGCATGACCTGCCGTCGACGTACAATCTGGTTCTGAAGGAGGTGTTAGGTCGCGGCCGTTTCTTCAAGTCTATTCAGTGCAAACACGACGAGGGTTTGGTACTCGTCAAGGTCTATTTCAAGCGCGGCGATTTCCTCGATCTCTCCGACTACGAACGCCGTCTCTCTCAGATCAAACAAATCTTCACCTCCATCGATCACCCTCACGTTTGGCCGTTCCAGTTTTGGCAAGAAACGGATAAAGCAGCCTACCTTTTGAGGCAGTATTTCTTTCATAATCTGCATGATAGGTTAAGCACTCGACCTTTTCTTTGTCTTGTTGAGAAGAAATGGTTGGCTTTTCAGTTGCTTGTAGCGGTAAACCAGTGCCACGAGAATGGAGTGTGTCACGGTGATATCAAGTGTGAGAATGTGCTGATTACCTCCTCCAATTGGCTTTACCTTGCTGACTTTGCCTCTTTCAAACCCACATACATTCCATATGATGACCCATCTGATTTCTCTTTTTTCTTTGACACTGGTGGACGAAGACTATGTTATCTTGCACCTGAGAGATTTTATGAACATGGAGGGGAGATGCAGGTGGCACAAGATACCCCCTTAAAACCCTATATGGATATATTCGCGGTTGGGTGTGTAATAGCTGAACTTTTCCTTGAGGGGCAGCCACTGTTTGAACTGTCTCAACTTCTTGCTTATCGCAGAGGGCAATATGATCCAAGTCAACACCTTGAAAAAATACCAGATATTGGAATCCGTAAAATGATATTGCACATGATCCAATTAGAACCAGAGTCCCGATTTTCTGCTGAAAGATATCTGAAGGAATATGCTGCAGTTGTTTTCCCGAATTATTTTTCACCATTTCTTCATGATTTTTACCGTTGCTGGAGTCCTCTTCATTCCGACATGAGGGTTTTACTATGCCAAAGTGCTTTTCCCGAGATACTTAAACAAATGATGAACAATCAGTCATCTGATGATGTAGCTGCTAATTCTGGGGAGCTTTTGGAAGAGATGGTTGCCAAAGGAAGTGTGAGTTTCGTGAAGGATTCAATGAGGAAGAGAGATGACATAGGCAAAGGCTTAGTCCATGATAACTATGAACTTCTTGGTGATATTAATAGCCTACTGAGGGATGCTAAAAGAAATAATAGTCCATCGGATGTAGCAGGAAATGCACATAATTCAACGTTCCCTGAAAATCTAACAAATCTGCAAACCGGTAAATTGCTTCAAACTATCTCCAATGCTTTTCGAGGAAATGATCATCCATTTTTGAAAAGTATTGCCATGGATGATTTGAATTCATTGATGTCTGAGTATGATAGTCAATCAGATACATTTGGAATTCCTTTTCTACCTTTACCAAAGGATAGTATGAGATGTGAAGGCATGGTGTTGATAACATCTTTGCTGTGCTCTTGCATTCGCAATATCAAGTTGCCTCACCTGAGGAGGGCGGCTGTGCTCTTGTTGAAGGCTTCTGCCCTATATGTTGATGATGAAGATCGTTTGCAGCGTGTTATCCCATATGTGATTGTAATGCTTTCAGATATAGCAGCAATTGTCCGTTGTGCTGCTTTGGAGACTTTGTGTGACATTCTTCCCTTAGTGAGGGATTTTCCTCCTAGTGACGCGAAGATATTTCCTGAGTATATTCTTCCAATGCTTTCTATGCTTCCTGATGATCCTGAGGAAAGTGTGAGGATATGCTATGCCAGCAATATAGCTAAACTGGCACTGACTGCTTATGGATTCCTGATACACTCAGTAAGCTTGAGTGAGGCAGGTGTCCTTGATGAATTGAGTTTGTCACAGAAACCGTTGACATCATCCAATCAAACTTCTGGAAGAATGAAAAGGATAAATGGCGAAGTTCAACTTCTGCAGCTGAGGAAATCCATTGCGGAGGTTGTGCAAGAACTTGTTATGGGTCCTAAGCAAACCCCAAATATAAGGAGAGCACTTCTTCAGGACATTGGCAAACTGTGCTTCTTCTTTGGTGTGAGACAGAGTAATGACTCTCTTTTACCCATTCTTCCTGCTTTCTTAAATGATCGGGATGAGCAATTAAGGACAGTATTCTATGAAAAAATAGTTTATGTCTGCTTTTTTGTGGGGCAAAGAAGTGTAGAAGAATATTTATTACCTTATATTGAGCAGGCTTTAAGTGACATGACGGAATCAGTCATCGTTAAAGCTGTAGAATGTATGTCTATTCTATGTAAAAATGGTTTCTTCCGTAAGAGGACATTACTTCAAATGATAGAACGTGGCTTTCCTTTATTGTGTTATCCTAGTGAATGGGTACGGAGATCGATTGTCTCTTTTATTGCTGCTAGCAGTGAGTGCCTGGGTGCAGTAGATTCTTATGTTTTCCTTGCTCCTGTTATACAGCCTTTCCTCCGCAGGCAACCTGTGTCTCTTGCATCTGAGAGGGCTCTGCTTTCATGTTTAAAACCTCCAGTCTCAAGACAGGTTTTCTATGAAGTCTTGGAGAACTCTAGGAGTTCAGACATGTTAGAAAGACAAAGAAAAATATGGTATAGTTCTTCACAGTCTAAACTATGGGAAATGGATTTACTGAAAAAAGGAATTGAAGAGTTGGACTCATTAAACAACTGGACTGACAAGCAACAAGGTCCTGGGGTTCAACAAACTGTCAGCACTGGCTTCCAAGAGCCAGGGATAATTGATTGTGACAAAGCTGAGGCAAAATTGAGAGATATGGGAGCCTTTGTGCATAATGATAGCAATGCTGCGGGACATCGTGATACTCAATGCATGGAGAAGTTACAGTTTTCAGGATTTATGTCACCAAATTTTAGTGGTGTGAACAGTTTGACTTATGAAAAGCCATCAGAAGGCATACCTCTGTACTCCTTCAGTGTGGACCGGCGGGGAATGGGAATTCTGCCTGCTGCAACTGATCCTCCACTGCCAATGAGTTCTCTGGGTTTTAGTTCATCTGCAATGCCCTGGGTTAACCCACTAAGCACGTCCTTTAATTTGGCTAGTTCAGTTCCAGCACCAAAGCTTTTTTCAGGTTCGTTTAGCATCAGCAATGGCTCTAAACAGTTCCATCGAGTGGTACATGAACCAGATGCCAGGGAAAATGAGACTGCCTATATTAATAGCACGTTTCAAGATTTGGGATCATCTGCTAATGTTCAAGGCACTTCAATTGCAATGGAAGATGCAACTGCCCAAACTGATCTATCAGGATTTCCATCCCATGCTCGAGCTTCCATTCCTGATTCTGGTTGGAGGCCCCGTGGGGTGTTGGTTGCACACCTCCAGGAGCACCGATCAGCTGTCAATGACATTGCTATATCTGCTGACCATAGTTTCTTTGTGAGTGCATCTGATGATTCAACAGTCAAGATTTGGGATTCCAGAAAGCTAGAAAAAGACATTTCATTCAGGTCTAAGCTAACTTATCACCTGGAGGGAAGCCGAGTGTTGTGTGCAGCAATGCTTCCAGGTTCTGCACAAGTTATAATTGGAGCGTCTGATGGATTTATTCATATGTTTTCTATTGATCATATGTCTAGAGGTCTAGGAAACGTTGTCGAGAAATATTCTGGCATTGCTGATATAACAAAGAAGGATATCAAAGAAGGTGCCATACTCAACCTATTGAATTGCCCTGTGGATAATTATACCATTATGTATAGCACACAGAACTGTGGCATTCATCTGTGGGATACTAGGTCAAATTCCAATACCTGGACTCTTAGAGCTACTCCTGAGGAGGGCTATGCTTCGTCTCTGGCATCAGGGCCTTGTGGTAATTGGTTTGTATCAGGGTCATCCCGGGGAGTTATTACACTTTGGGACCTGAGGTTTCTTATACCTGTTAATTCTTGGCAGTATTCTCTTGCTTGCCCTATAGAAAAGATGTGTCTCTTTCTTCCTCCTTCAAATGCTTCTTTGTCTTCAGCTGCCAGGCCCCTTGTTTATGTGGCTGCAGGTTGCAATGAAGTTTCTCTTTGGAATGCAGAGAATGGTAGCTGCCACCAGGTCCTAAGGATGGTCAATTACGACAGTGATGCTGAAATGTCTGATCTGCCTTGGGCCTTGGCTAGACCTTCAAGTAAGCCAACTTCTCAATCAGATCTAAGACGGAATGTTCATCGCAAGTATGGAGTTGATGAGCTAAACGAACCACCTCCTCGTCTTCCTGGTATTCGCTCATTACTTCCCTTGCCTGGGGGTGATTTGTTGACTGGAGGCACTGATTTAAAGATACGTCGGTGGGATCATTACAGTCCTGACAGAAGTTACTGTATTTGTGGACCAAACTTAAAAGGAATAGGAAATGACGATTTTTATGAAACAAAATCTAGTTTTGGGGTGCAAGTTGTACAGGAGACAAAAAGACGTCCTCTTACAATCAAGCTGACAGCAAAGGCAATTCTTGCGGCTGCTGCCACTGATTCTGCTGGTTGCCATCATGACTCTATTGTTTCTTTGGCTTCTATTAAGTTAAACCAGAGACTGTTACTTTCAAGTGGTAGAGATGGGGCCATCAAGGTTTGGAAGTAA 4602 0.427 MGNKIARTTQVSASEYYLHDLPSTYNLVLKEVLGRGRFFKSIQCKHDEGLVLVKVYFKRGDFLDLSDYERRLSQIKQIFTSIDHPHVWPFQFWQETDKAAYLLRQYFFHNLHDRLSTRPFLCLVEKKWLAFQLLVAVNQCHENGVCHGDIKCENVLITSSNWLYLADFASFKPTYIPYDDPSDFSFFFDTGGRRLCYLAPERFYEHGGEMQVAQDTPLKPYMDIFAVGCVIAELFLEGQPLFELSQLLAYRRGQYDPSQHLEKIPDIGIRKMILHMIQLEPESRFSAERYLKEYAAVVFPNYFSPFLHDFYRCWSPLHSDMRVLLCQSAFPEILKQMMNNQSSDDVAANSGELLEEMVAKGSVSFVKDSMRKRDDIGKGLVHDNYELLGDINSLLRDAKRNNSPSDVAGNAHNSTFPENLTNLQTGKLLQTISNAFRGNDHPFLKSIAMDDLNSLMSEYDSQSDTFGIPFLPLPKDSMRCEGMVLITSLLCSCIRNIKLPHLRRAAVLLLKASALYVDDEDRLQRVIPYVIVMLSDIAAIVRCAALETLCDILPLVRDFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLIHSVSLSEAGVLDELSLSQKPLTSSNQTSGRMKRINGEVQLLQLRKSIAEVVQELVMGPKQTPNIRRALLQDIGKLCFFFGVRQSNDSLLPILPAFLNDRDEQLRTVFYEKIVYVCFFVGQRSVEEYLLPYIEQALSDMTESVIVKAVECMSILCKNGFFRKRTLLQMIERGFPLLCYPSEWVRRSIVSFIAASSECLGAVDSYVFLAPVIQPFLRRQPVSLASERALLSCLKPPVSRQVFYEVLENSRSSDMLERQRKIWYSSSQSKLWEMDLLKKGIEELDSLNNWTDKQQGPGVQQTVSTGFQEPGIIDCDKAEAKLRDMGAFVHNDSNAAGHRDTQCMEKLQFSGFMSPNFSGVNSLTYEKPSEGIPLYSFSVDRRGMGILPAATDPPLPMSSLGFSSSAMPWVNPLSTSFNLASSVPAPKLFSGSFSISNGSKQFHRVVHEPDARENETAYINSTFQDLGSSANVQGTSIAMEDATAQTDLSGFPSHARASIPDSGWRPRGVLVAHLQEHRSAVNDIAISADHSFFVSASDDSTVKIWDSRKLEKDISFRSKLTYHLEGSRVLCAAMLPGSAQVIIGASDGFIHMFSIDHMSRGLGNVVEKYSGIADITKKDIKEGAILNLLNCPVDNYTIMYSTQNCGIHLWDTRSNSNTWTLRATPEEGYASSLASGPCGNWFVSGSSRGVITLWDLRFLIPVNSWQYSLACPIEKMCLFLPPSNASLSSAARPLVYVAAGCNEVSLWNAENGSCHQVLRMVNYDSDAEMSDLPWALARPSSKPTSQSDLRRNVHRKYGVDELNEPPPRLPGIRSLLPLPGGDLLTGGTDLKIRRWDHYSPDRSYCICGPNLKGIGNDDFYETKSSFGVQVVQETKRRPLTIKLTAKAILAAAATDSAGCHHDSIVSLASIKLNQRLLLSSGRDGAIKVWK* 1534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0459 1533 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1117 1149 - -
Vra1g0459 1533 SMART serkin_6 27 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0459 1533 Gene3D - 1039 1219 IPR015943 GO:0005515
Vra1g0459 1533 SUPERFAMILY WD40 repeat-like 1111 1533 IPR036322 GO:0005515
Vra1g0459 1533 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1501 1533 - -
Vra1g0459 1533 CDD STKc_Vps15 16 303 - -
Vra1g0459 1533 Gene3D Transferase(Phosphotransferase) domain 1 22 360 - -
Vra1g0459 1533 Gene3D - 1222 1533 IPR015943 GO:0005515
Vra1g0459 1533 Gene3D - 436 610 IPR011989 -
Vra1g0459 1533 SUPERFAMILY Protein kinase-like (PK-like) 25 292 IPR011009 -
Vra1g0459 1533 Pfam Protein kinase domain 29 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0459 1533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Vra1g0459 1533 SMART WD40_4 1493 1533 IPR001680 GO:0005515
Vra1g0459 1533 SMART WD40_4 1257 1298 IPR001680 GO:0005515
Vra1g0459 1533 SMART WD40_4 1158 1197 IPR001680 GO:0005515
Vra1g0459 1533 SMART WD40_4 1110 1149 IPR001680 GO:0005515
Vra1g0459 1533 SMART WD40_4 1405 1439 IPR001680 GO:0005515
Vra1g0459 1533 Pfam WD domain, G-beta repeat 1113 1149 IPR001680 GO:0005515
Vra1g0459 1533 Gene3D - 611 838 IPR011989 -
Vra1g0459 1533 PANTHER PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 1 1533 IPR045162 GO:0004674|GO:0016236|GO:0045324
Vra1g0459 1533 SUPERFAMILY ARM repeat 344 821 IPR016024 -
Vra1g0459 1533 ProSiteProfiles HEAT repeat profile. 694 732 IPR021133 -
Vra1g0459 1533 ProSiteProfiles Trp-Asp (WD) repeats profile. 1504 1533 IPR001680 GO:0005515
Vra1g0459 1533 ProSiteProfiles Trp-Asp (WD) repeats profile. 1117 1149 IPR001680 GO:0005515
Vra1g0459 1533 ProSiteProfiles Protein kinase domain profile. 27 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0459 Vra-Chr1 5597571 5606212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0459 23 252 AGC Kinase Gene Family AT5G04510 21.519 5.20e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_Pl-Tthe Vra1g0459 Pkinase 3.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0459 K08333 - gmx:100818467 2858.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0459 1 5597571 5606212 Vra1g0459 1 5597571 5606212 ECH