Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0454 ATGAAGACGAAGACGCCATTGAAGCAGCTGAAGCTCGCCGTTCCTGCTCAGAAAACCCCCATTACCTCTTTCCTGACTGCAAGTGGAACGTTCCATGATGGAGATCTACTGTTGAATCAGAAAGGGTTGCGTCTTATCTCTGAAGAAAAGGAATCACGGCCTTCGGATGGTAAGGAACTGGAATTTGACTTCACACTAGATGACCTTGAGACCATCAAAGTGATCGGAAAAGGCAGTGGTGGTGTGGTACAACTTGTTCGCCATAAGTGGGTTGGAAGATTGTTTGCTTTAAAGGTTATTCAGATGAATATACAAGAGGATATTCGAAAACAGATTGTTCAGGAACTGAAAATAAATCAAGCGTCGCAGTGTCCACATGTTGTAGTTTGCTATCACTCGTTCTATCACAATGGAGTTATATCACTTGTGTTAGAATACATGGATCGTGGTTCTTTAGCAGATGTAATCAAACAAGTTAAAACAATTCTGGAACCATATCTTGCCGTGGTTTGTAAGCAGGTATTGCAAGGTCTTGTTTATCTGCACAATGAACGACATGTAATACATAGAGACATTAAACCATCCAATCTGTTAGTTAATCACAAAGGGGAGGTGAAAATTACTGATTTTGGTGTTAGTGCTATGCTGGCAAGCTCAATGGGTCAAAGAGATACATTTGTTGGAACTTACAATTACATGTCGCCAGAAAGAATCAGTGGGAGTACTTATGATTATAGCAGTGACATCTGGAGTTTGGGCATGGTAGTGCTTGAATGTGCCATAGGAAGATTTCCTTATATTCAGTCCGAGGATCAGCAAAGCTGGCCTAGTTTTTATGAGCTTCTGGCAGCAATTGTGGACAGTCCCCCACCTTCTGCTCCTCCTGATCAGTTCTCCCCGGAGTTCTGTTCATTCGTGTCATCCTGCATCCAAAAGGATCCTCGGGATAGATTAACATCCTTGGAGCTTCTGAGTCACCCTTTCATAAAAAAGTTCGAAGATAAAGATCTTGATCTTGGGATTTTGGTAGGTAGCTTAGAACCTCCTGTAAATTTTCCCAGATAA 1065 0.4188 MKTKTPLKQLKLAVPAQKTPITSFLTASGTFHDGDLLLNQKGLRLISEEKESRPSDGKELEFDFTLDDLETIKVIGKGSGGVVQLVRHKWVGRLFALKVIQMNIQEDIRKQIVQELKINQASQCPHVVVCYHSFYHNGVISLVLEYMDRGSLADVIKQVKTILEPYLAVVCKQVLQGLVYLHNERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGSTYDYSSDIWSLGMVVLECAIGRFPYIQSEDQQSWPSFYELLAAIVDSPPPSAPPDQFSPEFCSFVSSCIQKDPRDRLTSLELLSHPFIKKFEDKDLDLGILVGSLEPPVNFPR* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0454 354 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Vra1g0454 354 SUPERFAMILY Protein kinase-like (PK-like) 66 342 IPR011009 -
Vra1g0454 354 PIRSF ILK 2 327 - -
Vra1g0454 354 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Vra1g0454 354 SMART serkin_6 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0454 354 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 1 353 - -
Vra1g0454 354 Gene3D Transferase(Phosphotransferase) domain 1 150 343 - -
Vra1g0454 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Vra1g0454 354 CDD PKc_MAPKK_plant_like 67 333 - -
Vra1g0454 354 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 353 - -
Vra1g0454 354 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0454 354 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0454 Vra-Chr1 5544097 5550465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0454 1 354 MAP Kinase Kinase Gene Family AT5G56580 85.915 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vra1g0454 Pkinase 3.7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0454 K04368 - gmx:100786284 686.411