Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0449 ATGGAGAATAGCTGCATTCTAGCCTTTCTCATCCTCATTCTACATTCAAACACAACAAAAGCTGTCTTCAGTGTTGGTGGTGGTGTTGGTGTAGGTGTAGGTGTAGGCGTTGGTGTTGGTGTTGGTGTTGGCAATGGAAATGGGGGTGGCAATGGTGGAATGGTTTGGGTTGGAGGAGGGATTAACAGCCCAGAGCCCCATGGATCTTCAGTGCCAAAACCTGAAGGAGCTTACACAGCTCTCCAAGCTTGGAAATCTGCAATCACTGAGGACCCTCTTAATATTTTAGAAAGTTGGGTTGGTCCAAATGTGTGTTCTTACAAAGGAGTCTTCTGTGCAAATCCTCAAGACGAAATGGTTGCATCAGCATTCCCAGTTGTTGCAGGCATAGATCTCAACCATGCAAATCTGAAAGGAACTCTAGTCAAAGAGCTGTCTCTACTCAGTGATTTGTCTCTTCTCCATCTCAACACTAACAGATTCACGGGTTCTGTTCCTGATACATTCAGAGACCTGGTTTTTCTGGAAGAGTTAGACCTCAGCAACAACCAACTTTCAGGTCCTTTCCCTGTTGCTACTTTGTACATGCCTGGCCTCATCTACTTAGACCTAAGATTCAACTACTTCTCTGGGGCCCTTCCCGAGGAACTTTTCATCAAGAATCTGGATGCAATATTTCTCAATAACAACCAGTTTGAAGGTGAAATTCCCCAAAACTTGGGTAGCTCCCCAGCCTCGGTGATAAACCTGGCCAACAACAAGTTGAGTGGAAACATCCCAGCAAGTTTGGGCTTCATGGGTTCTAAAATAAAGGAGATTCTGTTCCTGAATAACCAGTTAACTGGTTGCATCCCTGAGGGAGTGGGGCTATTCACGGAGATGCAAGTTCTGGATGTGAGCTTCAACTCACTTATGGGTCATTTGCCAGACACACTGTCATGCCTTCAAGACATAGAAGTTCTGAACTTGGCTCATAACAAGCTCTCTGGGGAGTTATCAGACGTAGTATGCTCTTTGAGAAGTCTTGCAAATCTAACTGTTGCTTACAATTTCTTTTCCGGGTTCAGCCAACAATGCTCAAGGCTTTTCTTTAGGAATGTGGGTTTTGATTTCTCCCTAAACTGCATTCCTGGGAGGGACATGCAGAGACCTCAACCTGAATGCTCTGTCATCCCAGGTGGTAGCCTTAGTTGTCTCAGAATCCCCACACCAAGGCCTCTTGTTTGTGGTTCAATGGCTGTAAGTAATTCTAAGCACATTCATCCCATTTCACCATCTCCTTGA 1284 0.4517 MENSCILAFLILILHSNTTKAVFSVGGGVGVGVGVGVGVGVGVGNGNGGGNGGMVWVGGGINSPEPHGSSVPKPEGAYTALQAWKSAITEDPLNILESWVGPNVCSYKGVFCANPQDEMVASAFPVVAGIDLNHANLKGTLVKELSLLSDLSLLHLNTNRFTGSVPDTFRDLVFLEELDLSNNQLSGPFPVATLYMPGLIYLDLRFNYFSGALPEELFIKNLDAIFLNNNQFEGEIPQNLGSSPASVINLANNKLSGNIPASLGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMQVLDVSFNSLMGHLPDTLSCLQDIEVLNLAHNKLSGELSDVVCSLRSLANLTVAYNFFSGFSQQCSRLFFRNVGFDFSLNCIPGRDMQRPQPECSVIPGGSLSCLRIPTPRPLVCGSMAVSNSKHIHPISPSP* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0449 427 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 427 - -
Vra1g0449 427 PANTHER LRR/EXTENSIN 1 427 - -
Vra1g0449 427 SUPERFAMILY L domain-like 77 361 - -
Vra1g0449 427 Gene3D Ribonuclease Inhibitor 77 243 IPR032675 -
Vra1g0449 427 Pfam Leucine rich repeat N-terminal domain 78 112 IPR013210 -
Vra1g0449 427 Gene3D Ribonuclease Inhibitor 244 366 IPR032675 -
Vra1g0449 427 PRINTS Leucine-rich repeat signature 175 188 - -
Vra1g0449 427 PRINTS Leucine-rich repeat signature 315 328 - -
Vra1g0449 427 Pfam Leucine rich repeat 151 208 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0449 Vra-Chr1 5519695 5521432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0449 72 400 Leucine-rich Repeat extension Gene Families AT3G24480 49.254 2.94e-104 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0449 - - gmx:100775544 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0449 1 5519695 5521432 Vra1g0449 1 5519695 5521432 ECH