Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0448 ATGAGTAAGATCAGCAACTTGAGTTCTGTAAGCAGTTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAATTGTGTGGATCCAAGCAGTGCCCTGGTTGCGGACACAAGTTTGAAGGGAAGCCGGACTGGCTAGGCTTGCCAGCAGGAGTGAAGTTTGATCCCACAGACCAAGAACTGATAGAACATCTTGAAGCCAAAGTGGAGGCAAAGAACATGAAATCACACCCTTTGATAGATGAGTTCATTCCCACTATTGAAGGAGAAGACGGAATTTGTTATACCCATCCAGAGAAACTTCCAGGAGTAACAAGAGATGGATTGAGCAGGCACTTCTTCCATAGACCCTCAAAGGCTTACACAACTGGGACAAGAAAGAGGAGAAAGATTCAAAACGAATGTGACTTGCAAGGTGGAGAAACCCGGTGGCACAAGACTGGTAAGACCAGACCAGTGATGGTGAATGGAAAACAAAAGGGTTGCAAGAAAATTCTTGTCCTTTACACCAACTTTGGAAAGAACAGAAAGCCAGAGAAAACCAACTGGGTGATGCATCAATACCATTTGGGGCAGCATGAAGAAGAGAAAGAGGGAGAGCTTGTGGTGTCCAAGATATTCTATCAGACACAGCCAAGACAGTGCAACTGGTCTGATAGAAGTGCAACAACTGGTGAAGGAAGTGGAGAACCTAACAACAGTAGCAGAAGGGACAGTGGAAGTGGAAGTTGTTCTTCCAAAGAAATTGCTACTCACAGAGATGAGATGTCTGCTGTTGTCGGTGTCCCTCCAATCACAACTTTCACTCATCACCCTTTGGACATTCACCATCTAAAACCTGATCACTTTAGCTTCATCCCTTTCAGGAAAAGCTTTGATGAGGTTGGAATGGGAGAGGCTTCAACAGCAAGGGAAGTAGTGCAAGCATCAGGTTCATGTGAAGAAGTGCATGAACGACAGAGAGCACAGCATGTAGTTCATCATCATCAACAACAACAACATCAGCAACATGCTCATCATCAGATTTCAAACTCAGCTTTTCATATCAGTAGGCCATCACATCCCATCTCCACCATTATTTCTCCACCTCCCCTCCACCATACTTCCATCATTCTCGATGACAACTCTTACCATGTCTCTAGAATAATGCTCCAAAATGAAAATTTTCAGCAGCAACAACAACATCATCATAAGCTTGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGTTGCACTTCAACTGAAATCAAAGAGGAGTCATCCATGACAAACCCACAAGAAGCTGAATGGCTGAAGTACTCTTCTTACTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG 1350 0.4474 MSKISNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEPNNSSRRDSGSGSCSSKEIATHRDEMSAVVGVPPITTFTHHPLDIHHLKPDHFSFIPFRKSFDEVGMGEASTAREVVQASGSCEEVHERQRAQHVVHHHQQQQHQQHAHHQISNSAFHISRPSHPISTIISPPPLHHTSIILDDNSYHVSRIMLQNENFQQQQQHHHKLGGRSASGLEELIMGCTSTEIKEESSMTNPQEAEWLKYSSYWPDPDNPDHHG* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0448 449 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Vra1g0448 449 MobiDBLite consensus disorder prediction 215 246 - -
Vra1g0448 449 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 4 432 - -
Vra1g0448 449 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Vra1g0448 449 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Vra1g0448 449 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Vra1g0448 449 MobiDBLite consensus disorder prediction 215 254 - -
Vra1g0448 449 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 4 432 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0448 Vra-Chr1 5507317 5513278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0448 11 446 NAC Transcription Factor Family AT5G56620 53.533 2.58e-141 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra1g0448 NAM 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0448 - - gmx:100795246 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0448 1 5507317 5513278 Vra1g0448 1 5507317 5513278 ECH