Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0444 ATGATGCTCGGAGAGCACCATCGAGCGAATCCAACCGTCCACGTCCCACCGTGGCCAACCCACGATGATCCAACGGCTGAGATGTACTCTTCTTTTTTATCAAACGACGTCAATGCTGCCGAGTACTCTCCCTACTATATTCAAGAAGCGTTAACGGCGCTGCAGCGTTATCTTCCTGCCAACGAAACTGACGCTGACTCGGACTCCGAGGCTCAACCCGACGCGCCGGTGGACGCGTACTCCTGCGACCATTTTCGCATGTACGAGTTCAAGGTCCGCAGATGCGCGCGTGGCAGGTCTCACGACTGGACCGAGTGTCCGTACGCGCATCCCGGCGAGAAGGCTCGCCGCCGAGACCCTCGTAAGTACCATTACTCCGGCGCGGCATGCCCTGAGTTCCGCAAGGGGAGTTGCAAGAAAGGTGATACGTGCGAGTTCGCGCACGGCGTCTTCGAGTGCTGGCTACACCCTGCGCGCTACCGCACGCAGCCGTGCAAGGACGGAACCAGTTGCCGCCGGCGCGTGTGCTTCTTTGCGCACACCCCGGAACAGCTGCGTCTCGTTCCGATGCAGAGTCCTCGCAGCTCGGGGGATTCATACGACGGTTCTCCGATGAGACAGGTTCTGCAGTCTTCGGCGTTCATGTCGTCTCCGGCTGCTTCTCTTTCTCCACCGGAATCTCCACCTGTGTCACCTTCTATGAACGAGATGGTGGCCTCTCTGCGTAATCTGCAGCTTGGTAAGATGAAATCGATGCCACATAACAGAAACGTTTCTGTCGGGTCTCCGGGTTACGGGTCACCAAGAGGTTCCGTACTTCGACCCGGGTTCTGTAGTCTACCCACAACACCAACTCAGCAACCGGGTCGGTCTGGGGTGAACTATTTGGATATCTGGGAGCAAAGTGTTGAGGAGGAGCCAGTGATGGAGAGGGTGGAGTCTGGAAGGGGCATAAGGGCGAAGATGTTTGAGAAGCTGAGCAAAGAGAACTCCCTGGAGGGATCGGGTCAGGGAAGTGGAGCTCCGGATGTTGGGTGGGTTTCGGAGCTTGTGAAGTGA 1059 0.5751 MMLGEHHRANPTVHVPPWPTHDDPTAEMYSSFLSNDVNAAEYSPYYIQEALTALQRYLPANETDADSDSEAQPDAPVDAYSCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGAACPEFRKGSCKKGDTCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLVPMQSPRSSGDSYDGSPMRQVLQSSAFMSSPAASLSPPESPPVSPSMNEMVASLRNLQLGKMKSMPHNRNVSVGSPGYGSPRGSVLRPGFCSLPTTPTQQPGRSGVNYLDIWEQSVEEEPVMERVESGRGIRAKMFEKLSKENSLEGSGQGSGAPDVGWVSELVK* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0444 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 149 IPR000571 GO:0046872
Vra1g0444 352 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 352 - -
Vra1g0444 352 MobiDBLite consensus disorder prediction 328 352 - -
Vra1g0444 352 PANTHER UNKEMPT FAMILY MEMBER 7 352 IPR045234 -
Vra1g0444 352 ProSiteProfiles Zinc finger C3H1-type profile. 125 151 IPR000571 GO:0046872
Vra1g0444 352 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Vra1g0444 352 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Vra1g0444 352 Gene3D - 120 195 - -
Vra1g0444 352 MobiDBLite consensus disorder prediction 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0444 Vra-Chr1 5469453 5470969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0444 73 258 C2H2 Transcription Factor Family AT5G12850 49.758 4.08e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra1g0444 zf-CCCH 2.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0444 - - gmx:100778184 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0444 1 5469453 5470969 Vra1g0444 1 5469453 5470969 ECH