Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0425 ATGGCGGCGTTGGTCAACTCAAGATTGAAGAGGGAACAATGCAACCGCACAAAACACGATTCTAGCTTCTCCCATTGGAAGATACTGATCGGCCCTTCTGATTGGGAAGATCATTCCAAAGGAAAGGAAGGTTGTCCAAGATACAGGATTCATAACCTCCCTGAGGAATCGAATCCAGGGGTGTATGAGCTTGGAATTGCTGTGTCCAATGGTGGTTTGGGGCGTGAAATTTCCAAGCTTACCCCTCATTCTCACCGCATATTGGTGGTTTACCTTGGACAAGCTGACAATGTGAGAACAAGACTCCAGCGTTATGGCAGAACAGGTGCTCATCTGCAGAGTGGCTGTTCGAATGGTTCTTCTTCCCAAGAGGGGCGCCCCTTGTTTGAGGAAGTGTTTTCACAAGGATTCTCAATCGTTTATAGATGGGCTCCTATGCAAAACAAGGAAGATGCCATGCGAACAGAAGCTCAGCTGCTCAGTACATTTGATTATGCGTGGAACACAAGCAGTAATGGTATCCGGAGGCCTGAAGAAATTCTTCAAAAGCTTCAAAAAATAGCTTCAGGCACTAGAACGCTTTCAGATGTGACCAAAGTGCTACTACCATTCACTCAGAAGCAAGTGGGCATCCGAATTAAATCAAGCAAGCTAGCTCAGGCAGATGACAAGTTAGATGAAGCAGACAATGGCAGCTATAATTTCCTATCTCGAGTATTCAGTTTTAACAGATCACGTCCTAGGATAGTTCAAAGTACCAGTGGTGTCGTTCAGGAACAGGAGAATGCTAAAATTTGTGGAGTGGCATTGGGTGATGGTTTGATTTGTAGAAGGCCACCAGTTGAGAAAAGATTGAGGTGTCCCGAACACAAAGGAATGAGAGCTAATGTTTCCATTGCCGAATCAGAGAGCAATGTTTCACAAACAGTGGTTGGGAGTCCTGTTGATGAAAGTCTGACAGACACAAATATATGTGGAATCATCTTAAATGATGGCTCCACTTGTAGAAGGAAACCGGTTCAAGGAAGGAAAAGGTGTCATGAGCATAAAGGTATGAGAATTGGTGCATCTGTTCAAAAAAAAGGCAACGGCGGATACAGATACCAAAATGGCAGCCATGTTGTAGAAGATTGTCTGCAAACACTGGTAGGGAATCCTGTTGATGAGAGTATCTCGAACACAAATATATGTGGAATCATCTTAAGTGATGGTTCTGCCTGTACAAGACAACCAGTTAAAGGAAGAAAAAGATGCCATGAACACAAAGGAAGAAGAATTCATGCATCCTTTATGTAA 1296 0.4367 MAALVNSRLKREQCNRTKHDSSFSHWKILIGPSDWEDHSKGKEGCPRYRIHNLPEESNPGVYELGIAVSNGGLGREISKLTPHSHRILVVYLGQADNVRTRLQRYGRTGAHLQSGCSNGSSSQEGRPLFEEVFSQGFSIVYRWAPMQNKEDAMRTEAQLLSTFDYAWNTSSNGIRRPEEILQKLQKIASGTRTLSDVTKVLLPFTQKQVGIRIKSSKLAQADDKLDEADNGSYNFLSRVFSFNRSRPRIVQSTSGVVQEQENAKICGVALGDGLICRRPPVEKRLRCPEHKGMRANVSIAESESNVSQTVVGSPVDESLTDTNICGIILNDGSTCRRKPVQGRKRCHEHKGMRIGASVQKKGNGGYRYQNGSHVVEDCLQTLVGNPVDESISNTNICGIILSDGSACTRQPVKGRKRCHEHKGRRIHASFM* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0425 431 Pfam GIY-YIG domain-containing protein 23 181 - -
Vra1g0425 431 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 3 361 IPR038909 GO:0003677|GO:0006355
Vra1g0425 431 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 382 428 IPR038909 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0425 Vra-Chr1 5377383 5379652 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0425 385 426 HRT Transcription Factor Family AT5G56780 57.143 3.72e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Vra1g0425 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0425 - - gmx:100784450 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0425 1 5377383 5379652 Vra1g0425 1 5377383 5379652 ECH