Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0424 ATGGTAATAGTTGAAATGAAGCAAAAGGATTGTTACAGAAAGGTGACAGGGAAAGTGGTGGTGGTTGCAGTTGAAGCAACGAAAGAAGTTTCAAGGAGTGGTTTGATGTGGGCTTTGACTAATGTTGTTCAACCAGGAGATTGTATTAAGCTGCTGGCTGTCATTCCGCCTTTCTGCTCAAACATCAGGGCACTGGGTTTCTCTGGGCTTGCTTTTGCTACTGATTGTATCACTACTCAGTGGAGATCCCGTTTAGGAACTGTCTCAGATCAAAAAGAAGTTTTTGTGAATTCATGCTCCCAGATGGTGCTTCAACTTCATCAGTTTTATGATCCAGAGAGGATAAAGATCAGAATCAAAATTCTTTCCGGTTCTTTTTGTGGAGCAGTGGCTGCTGAAGCCAAGAGAGCCAAATCAAGCTGGGTGATATTGGACAGAAAATTGAAAAATGAAAAGAAATACTGCATGGAGGAGCTGAATTGCAGTGTTGTAATCATGGAGCGATCTGGGCCAAACGTTCTGCGATTGAATTTGATCCTTTCAACAAATATGGAGCACAATGCATTTCCAGGAAACTTCAAAGGCAAATCTGAACATGCAAATACAATGAAGTGTCCGATTGTTACTCCTGGAAGTAGTCTAAAACAAGGATCAAAGACTGCTAGTATCACTGGAACACCATCAACACCTCGTACTTGGACTTCACCATTTTATCAATATGGTAATGATGGAGGACGAAGGAAAGATTCACCCTTTTCTCAGAACGAGGTGCAAAATGTGGAGGAAGGTGTATCCAATTCAGAGAGTGAAATCATTATGAGTTTGTCATCCTGCGGATCATATTTTCAGCCATGGATTTCAAATGCAATTTGTGGTGATGAAGAGTTTTCAAAAAACATTACCATTAACGAGGCTCTGGTTTCTCCCACCGAAGCATTGGTTCATAAATTGGATCATGAGCCTGTGTTAGGAGTGCTTAATTGTAAAATTGATGTGAACATAAGCAGAAGTGTCAGAGAAGCAATCTCACTAGGAAGAAATGGCACTCTTTGTCAGCATAAGGCACCTTTGTTTGGGAATCATCCAAGATGGTTTACATTTGCTGAACTGAAACTTGCCACTGCTGGATTTTCACAGGAAAATCTTGTTGCAGAAAATGAGGTTGGATCTGTACACCGTGGAGTCCTATCTGATGGGCAGGTTGTTGCTATCAAGCAGTGTAAATTAGCTGCTACTGAAGATGATGAAGAATTTTCTTTACAGGTTCAGGTCTTAAGCTGCACACAACATCGTAATGTTGTGATGCTAATTGGGTTTTGCGTGGAGTATGGAAGAAAAATTCTGGTTTATGAATATATCTGCAATGGATCTCTATATTCTCATCTTCATGAAAAGAATGAAAATGTAGTGAAATGGTGTGCACGGAAGAAAATTGCTCTGGGAGTAGCTCGTGGGTTGAGATACCTTCATGAAGAGTGTAGAGTGGGTTGTATTGTGCACGGCGACATTAGACCCTGCAATATCTTTCTTACTCATGACTTTGAGGCATTGCTATGTCTAAACTTTAATATGAAAATGGCTCCAGAATATACTGAAAGTGGTGAAATCACTGAAAAAGCTGATGTCTACTCGTTCGGGGTGCTATTACTAGAGCTTCTTACTGGACGCAAAGCTTTCCATGGAAGCCACCATTGCCTCCATCAATGGGATTTGATTGAGCGAGGTGACATTGATGAAGTTGTCGACCCAAAGATAAGAAACTGCATCATTGATGAGGAACTTCATCGCATGCTGCAATGTTCTACTCTCTGCATCCAACACCATCCTCATTTAAGACCACCAATGTCTCAGGTAGTCCAGATGTTAGAAGGTTATGTTTTGAAAAGTTGA 1890 0.409 MVIVEMKQKDCYRKVTGKVVVVAVEATKEVSRSGLMWALTNVVQPGDCIKLLAVIPPFCSNIRALGFSGLAFATDCITTQWRSRLGTVSDQKEVFVNSCSQMVLQLHQFYDPERIKIRIKILSGSFCGAVAAEAKRAKSSWVILDRKLKNEKKYCMEELNCSVVIMERSGPNVLRLNLILSTNMEHNAFPGNFKGKSEHANTMKCPIVTPGSSLKQGSKTASITGTPSTPRTWTSPFYQYGNDGGRRKDSPFSQNEVQNVEEGVSNSESEIIMSLSSCGSYFQPWISNAICGDEEFSKNITINEALVSPTEALVHKLDHEPVLGVLNCKIDVNISRSVREAISLGRNGTLCQHKAPLFGNHPRWFTFAELKLATAGFSQENLVAENEVGSVHRGVLSDGQVVAIKQCKLAATEDDEEFSLQVQVLSCTQHRNVVMLIGFCVEYGRKILVYEYICNGSLYSHLHEKNENVVKWCARKKIALGVARGLRYLHEECRVGCIVHGDIRPCNIFLTHDFEALLCLNFNMKMAPEYTESGEITEKADVYSFGVLLLELLTGRKAFHGSHHCLHQWDLIERGDIDEVVDPKIRNCIIDEELHRMLQCSTLCIQHHPHLRPPMSQVVQMLEGYVLKS* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0424 629 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 15 626 - -
Vra1g0424 629 SUPERFAMILY Protein kinase-like (PK-like) 357 623 IPR011009 -
Vra1g0424 629 ProSiteProfiles Protein kinase domain profile. 377 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0424 629 PANTHER OS01G0253100 PROTEIN 15 626 IPR045271 GO:0004714|GO:0006468
Vra1g0424 629 ProSitePatterns Tyrosine protein kinases specific active-site signature. 498 510 IPR008266 GO:0004672|GO:0006468
Vra1g0424 629 Gene3D Transferase(Phosphotransferase) domain 1 453 520 - -
Vra1g0424 629 Pfam Protein tyrosine and serine/threonine kinase 526 622 IPR001245 GO:0004672|GO:0006468
Vra1g0424 629 Pfam Protein tyrosine and serine/threonine kinase 382 514 IPR001245 GO:0004672|GO:0006468
Vra1g0424 629 Gene3D Phosphorylase Kinase; domain 1 345 452 - -
Vra1g0424 629 Gene3D Transferase(Phosphotransferase) domain 1 523 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0424 Vra-Chr1 5373111 5375771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0424 357 623 Trihelix Transcription Factor Family AT5G38560 39.597 1.60e-68 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vra1g0424 PK_Tyr_Ser-Thr 4.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0424 - - vun:114182477 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0424 1 5373111 5375771 Vra1g0424 1 5373111 5375771 ECH