Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0421 ATGGGCAGAAAATGCTCACATTGTGGAAACATAGGTCATAATTCCAGAACCTGCTCTTCTTTCAGAGCAACTTTTGTAGGAGTTCGTCTCTTTGGGGTTCAACTACACATATCAAACTCTTCTTCTCTTACCATGAAGAAAAGTTTCAGCATGGATTCCTTGCCCTTATTATCCTCTTCATCTTCCTCCTTTTCTTCATCAAGAATATCTATTGACGACCATCCTGAAAAAGCTTCTGTTAGCTATCTATCAGATTCCGATGGCCTCATTGTTCGACCACAAGACAGGAAGAAAGGAGTGCCATGGACAGAAGAAGAGCACAGAACATTCCTTGTTGGACTGGAGAAGCTGGGAAAAGGTGATTGGAGAGGTATCTCTAGAAACTATGTGACTACAAGAACCCCAACACAAGTTGCAAGCCATGCTCAAAAGTACTTTATTCGGCTTGCAACCTTGAACAAGAAAAAGAGACGTTCAAGTCTTTTTGACTTGGTTGGTGGCAGCTCTAACTGTAAGTCAGGTGATTTGGTTTCTCCTACTAAATCCAAAGGTGAAATTGAGAACGATGTCACCTTGTCACTTCTTCAAGCACAAGAAACCAAGACGGGTGAGCAGAAAGACAGTGATGATTGTTGTCAAGATGAAGCAGGTGCAGATCATGAAGCTGTTATGTGGCTTCATCCTCAGATGAAATCTTCATCGAATAATAGTAGTGCAGCAATTCCTGATCTGGAACTCACTCTTTCAGTCTCCAAGGGCAAGGCTAAGACCATGGAGCAAACTAAATCAACCCCTGGTTCCTTCTTTCTTGGACCAATTAGCGTGACTTAA 831 0.4224 MGRKCSHCGNIGHNSRTCSSFRATFVGVRLFGVQLHISNSSSLTMKKSFSMDSLPLLSSSSSSFSSSRISIDDHPEKASVSYLSDSDGLIVRPQDRKKGVPWTEEEHRTFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLATLNKKKRRSSLFDLVGGSSNCKSGDLVSPTKSKGEIENDVTLSLLQAQETKTGEQKDSDDCCQDEAGADHEAVMWLHPQMKSSSNNSSAAIPDLELTLSVSKGKAKTMEQTKSTPGSFFLGPISVT* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0421 276 ProSiteProfiles SANT domain profile. 102 150 IPR017884 -
Vra1g0421 276 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 97 148 IPR006447 GO:0003677
Vra1g0421 276 Pfam Myb-like DNA-binding domain 101 146 IPR001005 -
Vra1g0421 276 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Vra1g0421 276 Gene3D - 100 152 - -
Vra1g0421 276 SMART sant 98 148 IPR001005 -
Vra1g0421 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 150 IPR017930 -
Vra1g0421 276 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE ISOFORM X1 1 271 - -
Vra1g0421 276 CDD SANT 101 146 IPR001005 -
Vra1g0421 276 SUPERFAMILY Homeodomain-like 96 149 IPR009057 -
Vra1g0421 276 ProSiteProfiles Myb-like domain profile. 94 146 IPR001005 -
Vra1g0421 276 PANTHER TRANSCRIPTION FACTOR KUA1 1 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0421 Vra-Chr1 5362115 5363640 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra1g0421 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0421 - - pvu:PHAVU_004G171200g 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0421 1 5362115 5363640 Vra1g0421 1 5362115 5363640 ECH