Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0412 ATGGGGAAGGGAACAGGGAGTTTCGGTAAGAGGAGGAACAAGACCCACACCCTCTGTGTCAGATGCGGACGTCGCAGCTTTCACCTCCAGAAGAGTCGCTGTGCTGCGTGTGCTTTCCCAGCAGCACGCACTAGAAAATATAACTGGAGCGTCAAGGCCATTAGGAGAAAGACCACTGGAACTGGAAGAATGAGGTACCTGCGTCACGTGCCTCGCAGATTCAAGAGCGGCTTCAGAGAGGGTACCGAAGCTGCACCCAGGAAGAGAGGAACAGCTACCACTGCCTAA 288 0.5451 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARTRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTEAAPRKRGTATTA* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0412 95 PANTHER RIBOSOMAL PROTEIN L37 1 95 - -
Vra1g0412 95 Pfam Ribosomal protein L37e 3 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Vra1g0412 95 ProSitePatterns Ribosomal protein L37e signature. 4 23 IPR018267 GO:0003735|GO:0005840|GO:0006412
Vra1g0412 95 Hamap 50S ribosomal protein L37e [rpl37e]. 2 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Vra1g0412 95 PANTHER 60S RIBOSOMAL PROTEIN L37 1 95 - -
Vra1g0412 95 Gene3D - 1 87 IPR011331 GO:0003735|GO:0005840|GO:0006412
Vra1g0412 95 SUPERFAMILY Zn-binding ribosomal proteins 1 55 IPR011332 GO:0006412
Vra1g0412 95 MobiDBLite consensus disorder prediction 70 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0412 Vra-Chr1 5323842 5324715 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0412 1 95 Cytoplasmic Ribosomal Protein Gene Family AT1G52300 84.211 3.35e-56 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0412 K02922 - gmx:100809899 195.667