Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0410 ATGGCGAACTTTGCCAACTTCACTCAGAAACATCATCGTCTTGGGAGGTTTTTCCCACCCAAACTCAGATTCCTGCTCCGTTTTCTAGCCTTCCATGTCCACCCCTTCTTTATTCAACTCTGTTATTTTGGGATACTTTCTCTGCTTGGTTACCTTGCTCTCAAAAACTCAAACCCAAGAACCCCCGTTAGACCAAACGACTTTGACCTCTTTTACACCTCTGTTTCTGCTTCCACTGTTTCTAGCATGGTGGCAGTTGAAATGGAGGTTTTCTCCAATTCTCAGCTCATTCTCCTCACCTTTCTCATGTTTGTCGGCGGGGAAGTTTTCACTTCCATGCTTGACCTTCTATTTGCCAGGTATAAACTCACCCAGTCTGTCAAAAACAGAGATAGCACCAATCCCTTTTCACCCTCAGCAGAGAAGCCCCCAGTTCATGACAACCATGTGGAGCTTGGTTTAATATCTATTCCTCACTCTCAACCCGAAGACCAAAAACCTAGTAACGACAGTTATAGACTTAAGTATAACTGTCTTACTTATCTGACTTTTGTAGTTTTAGGTTACTTTGTGGTTGTTCAATTGGTCGGCTTCAGTTTGGTGTCTTTGTACATGACCTTGGTACCCAGTGCAACACAAATACTGAAAAACAAAGACATTAAGATTGCAACATTTTCTCTGTTCACCATAGTTTCCACTTTTGCCAGCTGTGGTTTTGTCCCCACCAACGAGAACATGATGGTTTTCAAGAAGAATTCGGGGCTTCTCCTCCTTATACTCCCACACGTATTTCTAGGTAACACCCTTTACCCTCCATGTTTGAGGGTGGTGATTATGGGTCTAAGAAAGGTGAGCAGAAGAGAGGAATTCTCACACCTGCTGAACAATTTCAAAGACATTGGATACGATCATATGCTCTCTGGTCTTCGTTGTTGCTACTTGGTTGCTACTGTTTTGTGTTTGAATGTTATACAGTTTGTGATGTTTTGGTCGATGGAATGGAAAACGAAAACTATGGAGGGTTTGAATTTTTATGAGAAATTGGTGGGATCATTGTTCCAAGTTACAAATGCGAGACACGCTGGTGAATCCGTGTTCGATCTCTCTTCCCTGTCTTCAGCCATATTGGTGGTCTTCGTTATCATGATGTACCTTCCGCCATATACTACATTTTTACCTGTAAGAAAGGAGGAAGATGACGCCAAGAGAAAAAGAAAAAGCGCAGTGGAGTGTCTTGTATTTTCTCAGCTCTCTTACTTAGCCATTTTCATCATTCTGGTTTGCATGACAGAGAGCAAAAGCTTGAAAGAAGATCCACTCAACTTTAACGTGCTCAGCATCACCCTCGAAGTCATAAGTGCTTATGGGAACGTAGGGTTCTCCATGGGATACAGCTGCGCAAGGAAATTGAAAGGAGATGGTACATGCAAAGATTCATGGGTTGGATTTTCTGGAAGATGGAGTAACAAAGGAAAGTTCGTCCTTATATTGGTCATGTTCTTTGGCAGGCTCAAGAAGTTCAACATGAAAGGTGGCAAAGCCTGGATCCTCTCTTAG 1557 0.4258 MANFANFTQKHHRLGRFFPPKLRFLLRFLAFHVHPFFIQLCYFGILSLLGYLALKNSNPRTPVRPNDFDLFYTSVSASTVSSMVAVEMEVFSNSQLILLTFLMFVGGEVFTSMLDLLFARYKLTQSVKNRDSTNPFSPSAEKPPVHDNHVELGLISIPHSQPEDQKPSNDSYRLKYNCLTYLTFVVLGYFVVVQLVGFSLVSLYMTLVPSATQILKNKDIKIATFSLFTIVSTFASCGFVPTNENMMVFKKNSGLLLLILPHVFLGNTLYPPCLRVVIMGLRKVSRREEFSHLLNNFKDIGYDHMLSGLRCCYLVATVLCLNVIQFVMFWSMEWKTKTMEGLNFYEKLVGSLFQVTNARHAGESVFDLSSLSSAILVVFVIMMYLPPYTTFLPVRKEEDDAKRKRKSAVECLVFSQLSYLAIFIILVCMTESKSLKEDPLNFNVLSITLEVISAYGNVGFSMGYSCARKLKGDGTCKDSWVGFSGRWSNKGKFVLILVMFFGRLKKFNMKGGKAWILS* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0410 518 PANTHER POTASSIUM TRANSPORT PROTEIN DDB_G0292412-RELATED 2 518 - -
Vra1g0410 518 Pfam Cation transport protein 175 385 IPR003445 GO:0006812|GO:0008324|GO:0055085
Vra1g0410 518 Pfam Cation transport protein 412 505 IPR003445 GO:0006812|GO:0008324|GO:0055085
Vra1g0410 518 PANTHER SODIUM TRANSPORTER HKT1 2 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0410 Vra-Chr1 5312764 5316491 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0410 55 517 Inorganic Solute Cotransporters AT4G10310 49.583 2.76e-156 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0410 K24976 - gmx:100797835 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0410 1 5312764 5316491 Vra1g0410 1 5312764 5316491 ECH