Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0409 ATGAACAACACCCTCTTCTTTTTTTCTACTCTTTTCCCACGCACCCTTCGTTTTCTACCGTTGCATTTCCATCCTTTCTTCTTACACCTTTGCTATTTCCTCGTACTTTCTGTCTTAGGTTTTCTCGGTCTCAAGGTTTCAAAGCCAAGGACCCCTTCTAGCCCTAATGACTTGAACCTCTTCTACACCTCAGTTTCTGCTTCCACAACTTCTAGCATGGTAGCCCTAGAAATGGAGCTTTTCTCCAATTCTCAACTTATTCTCCTCACCCTCCTCATGTTTCTTGGTGGGGAAGTTTTCACTTCCATACTCGATCTTCTACTTGCTAGGAATAAACTCATCCAAAACAAATTACGTAGCATCAATCCTTCTTCACCCTCAGATGAGTCCCCGACCAATGCCACTCATATTGAGCTTGGCTTAGTTTCTATTCCTCACCCAAAATCACAAAACCGGACACTGTCTGATAATGTTGCATCCGTTAGACTTAAGTATAACTGTCTTCGTTATCTGACTTACGTGGTGTTAGGTTACTTTGTTGTGGTTCAGTTTGTTGGATTTAGTTTGGTGTCTTTGTATATGACAGTAGTAGCGAGTGCAAGACAAGTACTGCGAAAGAAAGACATTAACGTTGTAACATTTTCTTTGTTTACCGTCGTTTCCACCTTTGCCAGTTGTGGCTTTGTCCCCACCAACGAGAACATGATGGTTTTCAAGAAGAATTCGGGTCTTCTCCTCCTTCTTCTCCCACATGTTTTTCTCGGTAACGCCCTATATCCACCGTGTCTGACACTTGTGCTAATGGTTTTGGAAAAAGTTACCAGAAAAGAGGAATTCTCACAGTTGCTGAAAAATTCCAACAACCTCGGCTATAGACATTTGCTCTCTGTTTATCATTGTTGTCTCCTGGTTGGTACAGTGTTTGGTTTGAACGTTATACAGTTTGTGATGTTTTGGTCCGTTGAATGGAACTCCGAAATCATGGAGGGTCTGAATTTGTATGAGAAAGTGATAGCGTCATTGTTTCAAGTTTCAAACTCCAGACACGCCGGTGAATCTGTTTTTGATCTCTCTTCCATCTCTTCAGCCATATTAGTACTCTTCATTGTGATGATGTACCTTCCGCCATATACTACATTTTTACCTGTAAGAAAGGAGGAAGATGACGCCAAGAGAAAAAGAAAAAGCGCAGTGGAGTGTCTTGTATTTTCTCAGCTCTCTTACTTAGCCATTTTCATCATTCTGGTTTGCATGACAGAGAGCAAAAGCTTGAAAGAAGATCCACTCAACTTTAACGTGCTCAGCATCACCCTCGAAGTCATAAGTGCTTATGGGAACGTAGGGTTCTCCATGGGATACAGCTGCGCAAGGAAATTGAAAGGAGATGGTACATGCAAAGATTCATGGGTTGGATTTTCTGGAAGATGGAGTAACAAAGGAAAGTTCGTCCTTATATTGGTCATGTTCTTTGGCAGGCTCAAGAAGTTCAACATGAAAGGTGGCAAAGCGTGGCATCTCTCTTAG 1524 0.4193 MNNTLFFFSTLFPRTLRFLPLHFHPFFLHLCYFLVLSVLGFLGLKVSKPRTPSSPNDLNLFYTSVSASTTSSMVALEMELFSNSQLILLTLLMFLGGEVFTSILDLLLARNKLIQNKLRSINPSSPSDESPTNATHIELGLVSIPHPKSQNRTLSDNVASVRLKYNCLRYLTYVVLGYFVVVQFVGFSLVSLYMTVVASARQVLRKKDINVVTFSLFTVVSTFASCGFVPTNENMMVFKKNSGLLLLLLPHVFLGNALYPPCLTLVLMVLEKVTRKEEFSQLLKNSNNLGYRHLLSVYHCCLLVGTVFGLNVIQFVMFWSVEWNSEIMEGLNLYEKVIASLFQVSNSRHAGESVFDLSSISSAILVLFIVMMYLPPYTTFLPVRKEEDDAKRKRKSAVECLVFSQLSYLAIFIILVCMTESKSLKEDPLNFNVLSITLEVISAYGNVGFSMGYSCARKLKGDGTCKDSWVGFSGRWSNKGKFVLILVMFFGRLKKFNMKGGKAWHLS* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0409 507 Pfam Cation transport protein 164 374 IPR003445 GO:0006812|GO:0008324|GO:0055085
Vra1g0409 507 Pfam Cation transport protein 401 494 IPR003445 GO:0006812|GO:0008324|GO:0055085
Vra1g0409 507 PANTHER SODIUM TRANSPORTER HKT1 19 507 - -
Vra1g0409 507 PANTHER POTASSIUM TRANSPORT PROTEIN DDB_G0292412-RELATED 19 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0409 Vra-Chr1 5305467 5307808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0409 45 506 Inorganic Solute Cotransporters AT4G10310 50.737 8.00e-160 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0409 K24976 - gmx:100797835 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0409 1 5305467 5307808 Vra1g0409 1 5305467 5307808 ECH