Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0406 ATGAAGACGCATCCTCCGCAGACCGACGGTGGCTCCGCCGCTCCCAATCCCAATCCCAATCCCTCCCAAGAGAGCAGGAGCATAAACCCGGAGCTGTGGCAAGCTTGTGCAGGGCCTTTGGTTAATCTTCCTCCCTCCGCCACACACGTCATCTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCATCTCTCAAGAAAGATGTTGACGCTCAAATTCCCAACTATCCCAATCTTCCCTCAAAGTTACTCTGTCTCCTTCACAATCTCACTCTGCATGCTGATCCCGAAACAGATGAAGTATACGCTCAGATGACGCTTCAACCGGTCCCTTCTTTCGACAAGGATGCTCTGTTAAGATCGGATCTTGCTCTCAAGTCCACCAAGCCACAACCCGACTTCTTCTGTAAACAGCTCACCGCAAGTGATACCAGCACTCACGGAGGTTTCTCAGTGCCCCGTCGTGCCGCCGAGAAGATTTTCCCTCATCTTGATTACTCTATGCAACCTCCTGCGCAAGAACTCGTCGCCAGGGATTTGCACGACAATGTTTGGACATTCCGCCACATATACCGTGGACAACCAAAACGGCACTTGCTTACTACTGGATGGAGTCTATTTGTCAGCGGAAAGAGGCTTTTTGCCGGAGACTCTGTTTTGTTTATAAGAGATGAGAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCACCAATATATCTTCGTCAGTACTATCCAGTGATAGTATGCACATTGGAATTCTTGCTGCAGCGGCTCATGCAGCCGCAAACAATAGCCCCTTCACCGTCTTTTATAATCCTAGGGCTAGTCCCTCAGAATTTGTTATTCCTTTAGCCAAGTACTACAAGTCGGTGTACAGCCACCAACCGTCACTTGGCATGCGTTTTCGAATGATGTTTGAAACTGAAGACTCGGGAACGAGAAGGTATATGGGTACAATTACAGGTATCAGTGATCTGGATCCCGTGCGATGGAAAAACTCTCAATGGCGAAATTTGCAGGTTGGTTGGGATGAGTCAACTGCTGGAGAAAAGCGTAGCAGGGTCTCAATCTGGGAAATCGAACCAGTAACTGCTCCATTTTTCCTCTGCCCGCCTCCATTCTTTAGATCCAAGAGGCCAAGACAACCTGGAATGCCGGATGATGACTTATCTGATTTTGATAACATTTTCAAGCGGACAATGCCTTGGCTTGGTGATGATATGTGCATGAAGGATCCCCAAGGTCTCCCTGGCCTGAGCTTAGCTCAATGGATGAACGTGCAGCAACATCCTGCACTGGCTGGCTCGTTGCAGCCAAATTTTGCACCTTCCTTACCGGGATCTATTTTGCAAAATATTCCTGGGGCTGATATATCTCGGCAGCTGGGATTTTCCGCTCCACAAATTTCTCAGTCAAACAATGTAGCCTTCAATACTCACAGACTACTTCAGACTGCTCAACAGCTGGATCAACTTCAGAAGCTACCATCTACATCTAGCACATTAGGAGCAGTCCTGCCACCACAGCAACAGTTGGGTGATATCACTCAACAATCAAGGCAGAACTTGGCAAATCAAACTATACCACAGAGTCAAGTTCAGGCCCAACTCTTGCATCCCCAAAACATTGTCCAAACCAACAATATTCTTCAACAGCAGCAACCATCCATTCAAAACCATCAAATGCATAGAAGCCTCTCTCAGAATCCATCACAGCAGCAGACAATTATAGGTCAGAGTCAACAACAAAATTTGATCCAGTCCCCTATCCCTGATCATGTTCAACAATTACAGATGTCTGACAATCAGATTCAGTTGCACTTGTTACAAAAGCTTCAACAACAAAAACAAACCCACTTGGCACAGCAAACAGTGTTGCAGCAGCCTACTCAGCTTACTCAAATCCAGGATCAGCAGAGACAGATTTTAGATAAAACACATAACCTGCCTAGAGCACTAACATCTGGTCAAGTTCTAGAAATACCTCCTATGCTTCAAAATTCACTGCCTGAGGCTAATTCTATCTCTAATCAGATCACAAAGGCTAATTTCCAGAACAGTATTCAATTCCCTCAGCAGTCCAAGCTTCAACAGCAGCAACCTGGCTTGCTGTCTGAAATGTCTGGTCACATGGGACTTCTTCCTACCCCTACTACAAATAACCAACTTTCTGCTGGTGGCAGTAGTATACTGAATGGAGCAGCTGGGGCAGGGCAATCTGTAATTACGGATGATATTCCTTCTTGCTCCACCTCACCTTCTGCAAATAACTGTGCCAGTGCACTGCCACCATTGATAAATTCTCGATTGCAGAGAAACACAATAGTAGGGGATGACATGGCTCAGTCTGCTTCAACAATCTTGAGTTCAAGTGCGTTAGAAACTATGTCATCAAATGCAAACTTGTTGAAAGATATACAACCGAAGTCTGAAGTTAAACCTTCTCTGAATATTTCCAAAAGTCAGAATCAAGGGCATTTTGGCCTTCAGTCATACTTGAATGGTAGTGCTGTCCATACTGATTGTTTGGACACATCATCTTCTACAACATCAGTTTGCCTTTCTCAGAGTGACGCTCATATGAATCAGAATAATAATCCATTAGCTTACAATCCACATCCTATGTTGTTTAGAGACAATAGTCAAGATGGGGAAGTTCAGGCAGATGCTAGGGGCAATATTCCATATGCCAACAACATTGATAGCCAAATGGGAATGCCACTGAATCCAGATTCCCTTTTAACCAAGGGCACATTGGGGTTGGGGAAGGATTTGTCTAATAACTTCTCTTCAGAAGCCCTGCTTGGTAATTATGAAAATAACAGAGATGCTCAGCAGGAACTTTCATCTTCAATGGTTTCACAGTCATTTGGAGTCCCTGATATGGCCTTCAATTCAATTGATTCCACTATAGATGATAGTAGCTTTTTGAATAGGGGTACATGGGCTCCACCACCAGCACCGCCTCCACCACCTCTGCCACCAGCACAGTTTCAGCGGATGAGGACGTATACCAAGGTATATAAACGTGGAGCTGTGGGAAGGTCCATAGACATAACGCGGTATTCAGGTTATGAAGAACTTAAACAGGATCTAGCTCGTAGATTTGGAATAGAGGGGCAGCTGGAGGATCGGCAGAGGATAGGTTGGAAACTTGTCTATGTAGATCACGAGAGTGATGTTCTACTGGTGGGAGATGACCCTTGGGAGGAGTTCGTGAACTGTGTCCGCTGTATTAAAATACTTTCTCCTCAAGAAGTGCAACAGATGAGCTTGGATGGAGATTTTGGCAATGGCGGCCTTCCAAATCAAGCGTGTAGCAGCTCTGACGGTGGGAATACCTAA 3357 0.4573 MKTHPPQTDGGSAAPNPNPNPSQESRSINPELWQACAGPLVNLPPSATHVIYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCLLHNLTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSTKPQPDFFCKQLTASDTSTHGGFSVPRRAAEKIFPHLDYSMQPPAQELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKSVYSHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRSRVSIWEIEPVTAPFFLCPPPFFRSKRPRQPGMPDDDLSDFDNIFKRTMPWLGDDMCMKDPQGLPGLSLAQWMNVQQHPALAGSLQPNFAPSLPGSILQNIPGADISRQLGFSAPQISQSNNVAFNTHRLLQTAQQLDQLQKLPSTSSTLGAVLPPQQQLGDITQQSRQNLANQTIPQSQVQAQLLHPQNIVQTNNILQQQQPSIQNHQMHRSLSQNPSQQQTIIGQSQQQNLIQSPIPDHVQQLQMSDNQIQLHLLQKLQQQKQTHLAQQTVLQQPTQLTQIQDQQRQILDKTHNLPRALTSGQVLEIPPMLQNSLPEANSISNQITKANFQNSIQFPQQSKLQQQQPGLLSEMSGHMGLLPTPTTNNQLSAGGSSILNGAAGAGQSVITDDIPSCSTSPSANNCASALPPLINSRLQRNTIVGDDMAQSASTILSSSALETMSSNANLLKDIQPKSEVKPSLNISKSQNQGHFGLQSYLNGSAVHTDCLDTSSSTTSVCLSQSDAHMNQNNNPLAYNPHPMLFRDNSQDGEVQADARGNIPYANNIDSQMGMPLNPDSLLTKGTLGLGKDLSNNFSSEALLGNYENNRDAQQELSSSMVSQSFGVPDMAFNSIDSTIDDSSFLNRGTWAPPPAPPPPPLPPAQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHESDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDGGNT* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0406 1118 CDD B3_DNA 134 226 IPR003340 GO:0003677
Vra1g0406 1118 Pfam Auxin response factor 261 344 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vra1g0406 1118 Pfam B3 DNA binding domain 135 236 IPR003340 GO:0003677
Vra1g0406 1118 MobiDBLite consensus disorder prediction 979 1001 - -
Vra1g0406 1118 Gene3D - 299 370 - -
Vra1g0406 1118 SUPERFAMILY CAD & PB1 domains 1019 1084 - -
Vra1g0406 1118 PANTHER AUXIN RESPONSE FACTOR 8 1112 - -
Vra1g0406 1118 SMART B3_2 135 237 IPR003340 GO:0003677
Vra1g0406 1118 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 1112 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vra1g0406 1118 ProSiteProfiles PB1 domain profile. 1006 1090 IPR000270 GO:0005515
Vra1g0406 1118 Gene3D - 133 236 IPR015300 -
Vra1g0406 1118 SUPERFAMILY DNA-binding pseudobarrel domain 125 264 IPR015300 -
Vra1g0406 1118 MobiDBLite consensus disorder prediction 1 27 - -
Vra1g0406 1118 MobiDBLite consensus disorder prediction 986 1001 - -
Vra1g0406 1118 Pfam AUX/IAA family 1005 1091 IPR033389 -
Vra1g0406 1118 Gene3D - 1001 1095 - -
Vra1g0406 1118 ProSiteProfiles B3 DNA-binding domain profile. 135 237 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0406 Vra-Chr1 5279175 5285402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0406 24 478 B3 DNA Binding Superfamily AT1G19220 72.052 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vra1g0406 B3 1.7e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0406 - - ccaj:109803454 1902.1