Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0404 ATGTCGAGGATGAACTCAGAGAAGAAGCTTGGTGCAGGACGTGTGGTGGCTGTGGCCATTGAGAATAACAAGACCAGCCAACATGCTGCCAAGTGGGCAGTCGACAACCTTCTTCCCAAGGATCAATGTCTCTTGCTCATCCATGTCAGACCAAAATCATCCTCAGCGAATTCCGCCAACGAAGCTGTGGGTGACAACGAATCCAAGGAACTCTTCGAATCGTTTAGAGTTTTCTGCAATAGAAAAAGTATACAATGCAGAGAAGTGTTATTGGAGGACATGGATATATCTAAGGCATTATTGGAAAACATTTCTGTGAATTCCATCGAGTTTCTGGTACTTGGGGCGCCATCAAGGGGTGGCATTGTTAGGAGATTTAGAACAACGGATGTTCCAAGCTCTGTGTCAAAGGGTGCGCCACCATTCTGCACAGTGTATATAATTTCTAAAGGAAAAATCTCGAGTGTGAGATCTGCTACTGCTCCATTGGCTCCTAAACCTGCTGCAGCACGTAACCAATTGCAGCCACAACAGCCACAGCCACTACAACCACAGCCACGCTACCAGCCACTGATGCGAAACCCTGAAGGACTTTTGGAATCTCATCAAACTCGCAACTACCCACCAAGACCTTCACAAGGGAGTGGAACACATAAGATGGTGTTGGATGATGATGATATCATATCACCATTCACAAGGGCTGGCAAATCATACGAGTCTTCAAAACTTCCAGATTCTGACATATCATTTGTGAGCAGCGGAAGGCCAAGCATTGATCGAATATTCCCGACAATGTACGACGATTTGGACACTGCGAGTGGAAGGCTTTCGGGTGTTTCTGATTCTGACACCAGAAGCTTCGCTTCTTCATTGTCCTCGCAAGGAATTGATGACTTCTCCTTCTCCTCGCAATCAAGGTTATCAGACTGCACGGATGATGTTGAATTCGAGATGAGGAGGCTGAAGCAGGAACTGAAGCAGACGATGGATATGTACAGCTCGGCCTGCAAAGAAGCTATGACTGCAAAGCAGAGGGCAATGGAGCTTCAACGGTGGAAAGCGGAAGAACAGAAGAGATCGGAAGATTCGGAAACGGTTGATGCCTCGGCCATACAATTCATGGAGATGGAGCAGGATAGAATTAGAGCAGAAGCCCTTGAAAAAATCGCCGCACTGGAAGCACAGAAGAGAATGACCCAAGTAGAGAGAAGGAGACCGAGTGAAAGCTTTGGACACGGCCCTGCCATGTACAGAAGGTACACCATTGAGGAAATTGAAGAGGCAACAAACATGTTTTCGGACTCTCTTAAGATCGGCGAAGGAGGTTATGGTCCTGTCTACAGGAGTGAACTCGATTGCACCCAGGTTGCCATCAAGGTCTTGAAGCCAGATGCAGCTCAAGGGCGCGAGCAGTTTCAACAGGAAGTAGAAGTGTTGAGTCGCATAAGGCATCCGAACATGGTTCTGTTGCTGGGGGCATGTCCAGAGTATGGTTGTCTTGTGTATGAGTACATGGCGAATGGAAGCTTGGATGATTGCTTGTTCAGGAGAGGAAGCTCACGTCCTCCTCTTCCATGGCAGCTAAGGTTCCAAATTGCCGCAGAGATAGCAACAGGTCTGCTTTTCCTCCACCAGACAAAACCAGAGCCACTGGTCCACCGTGACCTAAAACCGGGCAACATTCTCCTTGACCGGAACTACGTGAGCAAGATCAGTGACGTGGGGTTGGCAAGGCTGGTGCCTCCTTCGGTTGCAGACAGTGTGACACAGTATCGCATGACTTCCACTGCCGGAACCTTCTGCTACATCGACCCGGAGTACCAGCAAACGGGCATGCTGGGAATCAAATCCGACATATACTCTCTGGGGATCATGCTTCTGCAATTGGTGACGGCGAGGCCTCCGATGGGTTTGACTCATCATGTTTCGAGATCCATCGAGAACGGAACTTTTCCCGAGATGCTTGACCCAGCTGTTGAGGACTGGCCAGTTGAACATGCCTTGCATTTCGCAAAGCTTTCCCTGGGATGTGCTGAAATGAGGAGAAAAGATAGACCTGATCTTGGAAAAGTTGTCTTGCCTGAGCTCAATAAGCTCAGGGCATTTGCTGAAGATAGCATGTCGCCTATGATGATGTTTGGACTTCGAACCGGAGGAAGTGGCGGCGGCGGTGGAGGGTATATTCCAAGAAACAGTAACCCATCATCATCCACACATTCTGACACGAGTAATTTGTCTGGGTTCTCTGGATACGAAAGCCGCTCAAGCTCATCATCACAGGGGAGACTGTAA 2292 0.4869 MSRMNSEKKLGAGRVVAVAIENNKTSQHAAKWAVDNLLPKDQCLLLIHVRPKSSSANSANEAVGDNESKELFESFRVFCNRKSIQCREVLLEDMDISKALLENISVNSIEFLVLGAPSRGGIVRRFRTTDVPSSVSKGAPPFCTVYIISKGKISSVRSATAPLAPKPAAARNQLQPQQPQPLQPQPRYQPLMRNPEGLLESHQTRNYPPRPSQGSGTHKMVLDDDDIISPFTRAGKSYESSKLPDSDISFVSSGRPSIDRIFPTMYDDLDTASGRLSGVSDSDTRSFASSLSSQGIDDFSFSSQSRLSDCTDDVEFEMRRLKQELKQTMDMYSSACKEAMTAKQRAMELQRWKAEEQKRSEDSETVDASAIQFMEMEQDRIRAEALEKIAALEAQKRMTQVERRRPSESFGHGPAMYRRYTIEEIEEATNMFSDSLKIGEGGYGPVYRSELDCTQVAIKVLKPDAAQGREQFQQEVEVLSRIRHPNMVLLLGACPEYGCLVYEYMANGSLDDCLFRRGSSRPPLPWQLRFQIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQLVTARPPMGLTHHVSRSIENGTFPEMLDPAVEDWPVEHALHFAKLSLGCAEMRRKDRPDLGKVVLPELNKLRAFAEDSMSPMMMFGLRTGGSGGGGGGYIPRNSNPSSSTHSDTSNLSGFSGYESRSSSSSQGRL* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0404 763 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 126 - -
Vra1g0404 763 MobiDBLite consensus disorder prediction 199 213 - -
Vra1g0404 763 MobiDBLite consensus disorder prediction 722 763 - -
Vra1g0404 763 Gene3D HUPs 2 148 IPR014729 -
Vra1g0404 763 CDD STK_N 15 151 - -
Vra1g0404 763 Gene3D Transferase(Phosphotransferase) domain 1 505 710 - -
Vra1g0404 763 Gene3D Phosphorylase Kinase; domain 1 406 504 - -
Vra1g0404 763 SMART serkin_6 432 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0404 763 MobiDBLite consensus disorder prediction 162 221 - -
Vra1g0404 763 PANTHER OS02G0152300 PROTEIN 1 762 - -
Vra1g0404 763 MobiDBLite consensus disorder prediction 729 763 - -
Vra1g0404 763 ProSiteProfiles Protein kinase domain profile. 432 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0404 763 SUPERFAMILY Protein kinase-like (PK-like) 410 692 IPR011009 -
Vra1g0404 763 Pfam Protein kinase domain 435 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0404 763 ProSitePatterns Serine/Threonine protein kinases active-site signature. 551 563 IPR008271 GO:0004672|GO:0006468
Vra1g0404 763 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 1 762 - -
Vra1g0404 763 Coils Coil 382 402 - -
Vra1g0404 763 Coils Coil 318 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0404 Vra-Chr1 5271746 5276681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0404 1 714 Receptor kinase-like Gene Family AT1G78940 51.535 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vra1g0404 Pkinase 8.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0404 - - pvu:PHAVU_004G177800g 1197.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3348 7 52908418 52912552 Vra1g0404 1 5271746 5276681 PCT