Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0403 ATGGCACTCTCCACTTCTTTGACTCCATTCACGTTTCTCCTTTCATCTTCATTTCTATCGCATATTCTTCTCATCGTAACTGCTTCAGACAAAGAATTGCTCCTCGGATTCAAAGACTCCATTGAAAACAAACATGTCTTGTCTTCCTGGAATGAATCCGTCCCTCCATGTTCTCCCAAACAACCTAACTGGCCTTACATTCACTGTTATAAAGGACACGTCTGGGGTTTGACGCTCGAGAACATGAGACTCAAAGGGGTCGTTGACGTTCAAGCCCTCCAGAAGCTACCCTATCTTCGAACCTTAAGCCTCAAGAACAATGATTTTAACACTGAATGGCCTTACATCAACGGCATTCTGGGTTTGAAGGCCCTTTTTCTTTCCAATAACAAGTTTTTTGGGGAGGTTCCTGCTCAGGCTTTTCAGGACATGAAATGGTTAAAGAAAATCCATTTGTCCAACAACCGCTTCACCGGTCATATTCCAACTTCCCTCGCATCCATGCCCAGGCTTATCGAGTTGAGGCTCGAAGGAAACCAATTCACCGGCTCCATACCCAATTTTCTACGCCCATTGCAATCTTTTTCTGCAGCTGATAATAAATTAGAGGGACAAATACCAGAGGGCCTCCGTGACCTCCCAGTTTCAGCTTTCTCTGGTAATGAAGGGCTATGTGGAGCACCATTAGAAGCATGCAAGTCCAAAAAGCTATCACTTCTGAGTATTATTGTGACTGTTGTTCTTGTTCTTGTAGCACTGGTTGTTATTGGAGCAGTAGTGTTGTTAGTCCTTCGCCGGAGAAGAGAGCAGCTGCCAGATGTGTCTGAGGAAGATTCACCATCAGTGTCCCACATGAAAGCAAGAAGTAGGGAACCATCGGAGGAAGGAAGTCGCAGGTCCCGCTCCTCGAGCCGCATCAGCAAAGGAGACACCATGATGTTATCGTTTGTGAGGGATCACAAAGACCAGTTTAATTTGCATGAACTACTGAGTGCCTCAGCTGAGGTACTGGGCAGTGGTTGTTACAGCTCTTCCTACAAGGCTTCTTTGTTAAATGGACCAGTTATGGTGGTCAAGAGATTCAAGCAAATGAACAATGTCGGAAGGGAAGAGTTTCACGAGCACATGCGACGGTTTGGACGGTTAAATCATCCTAATCTGCTTCCTCTCATTGCCTACTACTACAGAAAGGAGGAGAAACTCTTCGTTACTGACTTTGTTCACAATGGCAGCTTGGCTGTTCGCCTCCATGGATACCAAGCTCTAGGGCAGCGAAGCCTGGAGTGGGCAAGTAGGTTGAAGATAGTGAAAGGCATAGCAGAAGGACTTGAATATCTTTACAGGGAGATGCCAAGCTTAATAGCGGCGCATGGACATCTGAAATCCTCGAACGTTCTTCTGAATGAATCTTTGGAACCCCTTCTGACGGACTATGGGTTGGTACCGGTGATAAATCAAGACCTTGCTCCTGACATAATGGTGATCTATAAGTCCCCAGAGTATTTGCAGCATGGTCGCATTACAAAGAAGACTGATGTGTGGAGTCTTGGGATAATTATTTTGGAGATTCTAACGGGAAATCTTCCTGTTAACTTTCTACAAGGAAAAGGAAGTGATTTGAGTTTGGGAAACTGGGTCCATTCGGTCTCGGAAGAGTGTAGCAGTGAGGTGTTTGATAAGGATATGGAGATAAGCAGAAACAGTGAGGGAGAGATGATAAAGCTTTTGAAGATTGCATTGGCTTGTTGTGAAAGGGACGTTGACAAGAGATGGGACTTAAAAGAAGTTGTAGATAGAATTCATGAAGTAAACGAAACTGATAACGAGGATCAATGTTCCCGTTCTTCTTCTAATGCTAGTGAAGTTGAAATCAAGCAGACTCAGTCAGGTGAAGTTAGTTTCTCCATAGATATGGCTCAATGA 1923 0.4457 MALSTSLTPFTFLLSSSFLSHILLIVTASDKELLLGFKDSIENKHVLSSWNESVPPCSPKQPNWPYIHCYKGHVWGLTLENMRLKGVVDVQALQKLPYLRTLSLKNNDFNTEWPYINGILGLKALFLSNNKFFGEVPAQAFQDMKWLKKIHLSNNRFTGHIPTSLASMPRLIELRLEGNQFTGSIPNFLRPLQSFSAADNKLEGQIPEGLRDLPVSAFSGNEGLCGAPLEACKSKKLSLLSIIVTVVLVLVALVVIGAVVLLVLRRRREQLPDVSEEDSPSVSHMKARSREPSEEGSRRSRSSSRISKGDTMMLSFVRDHKDQFNLHELLSASAEVLGSGCYSSSYKASLLNGPVMVVKRFKQMNNVGREEFHEHMRRFGRLNHPNLLPLIAYYYRKEEKLFVTDFVHNGSLAVRLHGYQALGQRSLEWASRLKIVKGIAEGLEYLYREMPSLIAAHGHLKSSNVLLNESLEPLLTDYGLVPVINQDLAPDIMVIYKSPEYLQHGRITKKTDVWSLGIIILEILTGNLPVNFLQGKGSDLSLGNWVHSVSEECSSEVFDKDMEISRNSEGEMIKLLKIALACCERDVDKRWDLKEVVDRIHEVNETDNEDQCSRSSSNASEVEIKQTQSGEVSFSIDMAQ* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0403 640 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Vra1g0403 640 MobiDBLite consensus disorder prediction 607 640 - -
Vra1g0403 640 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Vra1g0403 640 ProSiteProfiles Protein kinase domain profile. 331 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0403 640 Gene3D Ribonuclease Inhibitor 23 117 IPR032675 -
Vra1g0403 640 Gene3D Ribonuclease Inhibitor 118 238 IPR032675 -
Vra1g0403 640 Gene3D Transferase(Phosphotransferase) domain 1 407 629 - -
Vra1g0403 640 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 615 - -
Vra1g0403 640 Pfam Protein kinase domain 334 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0403 640 PANTHER LRR RECEPTOR-LIKE KINASE 16 615 - -
Vra1g0403 640 MobiDBLite consensus disorder prediction 273 305 - -
Vra1g0403 640 MobiDBLite consensus disorder prediction 610 640 - -
Vra1g0403 640 SUPERFAMILY L domain-like 29 229 - -
Vra1g0403 640 SUPERFAMILY Protein kinase-like (PK-like) 335 602 IPR011009 -
Vra1g0403 640 Gene3D Phosphorylase Kinase; domain 1 297 406 - -
Vra1g0403 640 MobiDBLite consensus disorder prediction 273 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0403 Vra-Chr1 5268565 5272118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0403 29 639 Receptor kinase-like Gene Family AT5G35390 46.948 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra1g0403 Pkinase 4.4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0403 - - ccaj:109803310 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0403 1 5268565 5272118 Vra1g0403 1 5268565 5272118 PCT