Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0395 ATGCTGGAAGGTGGTGCGAAATTCCCGGGAATAATAGACCTCAACAAGCAGAACGATGACTACTATGATTTCTCTAAGGGCTTTTACCATAAGCTTGAGGAGGGCGCGGATATGTTAATTGACAGCATTGGGAGCTTGCAAACAAGTAACCATGGAGGATCTGTTGCAATGTCCATTGATAATAGCAGTGTTGGCTCCAATGATTCTCATACTCGTATATTGAACCACCAAGGGTTGCGGAGACGCCCCAATGATAATTCCTCCATTGCACACAGTGTCAATCATCGAGGAAGAGTTACACATGCTTTGAGTGATGATGCTTTGGCTCAAGCACTAATGGACAGTAGTTCCCCAACTGAAGGGCTTGACAATTTTGATGAGTGGACAATTGATTTGAGGAATCTTAGTATGGGTGAGGCTTTTGCTCAAGGGGCTTTTGGGAAACTCTACAGAGGTACTTACAATAATGAAGATGTTGCTATTAAAATCTTGGAGAGGCCTGAAAATGATTCAACAAAGGCTCAGTTGATGGAACAACAGTTTCAGCAGGAGGTGATGATGCTGGCTACATTAAATCATCCTAACATTGTTCGTTTTATTGGTGCATGCCATAAGCCAATGGTATGGTGTATTGTTACAGAATATGCCAAAGGGGGTTCAGTTCGGCAATTTTTAATGAAGCGACAAAACAGATCAGTGCCCCTTAAATTGGCTGTTAAACAAGCTTTGGATGTTGCACGTGGGATGGCATATGTTCATGGCCTTGGATTGATCCACAGGGACTTGAAATCCGATAATCTCTTAATTTTTAGTGATAAATCAATTAAAATTGCTGATTTTGGCGTTGCTCGGATTGAGGTGCTAACGGAAGGAATGACACCTGAGACAGGAACATACCGTTGGATGGCTCCGGAGATGATCCAGCATAGGCCTTACACACAAAAGGTGGATGTATATAGCTTTGGGATTGTTTTATGGGAACTCATCACTGGAATGCTTCCGTTTCAGAACATGACAGCGGTACAGGCAGCATTTGCAGTTGTCACCAAAAACGTTCGCCCTATCATACCCAATGACTGCTTACCTGTTCTCCGTGAGATCATGACAAGATGCTGGGATCCCAACCCTGATATTAGGCCACCGTTTACTGAAATTGTAGGAATGCTTGAGAACGCAGAGACTGAGATCTTGACAACGGTTCGGAAGGCCCGATTTAGGTGTTGCATGACACAACCAATGACTGCTGACTGA 1251 0.4365 MLEGGAKFPGIIDLNKQNDDYYDFSKGFYHKLEEGADMLIDSIGSLQTSNHGGSVAMSIDNSSVGSNDSHTRILNHQGLRRRPNDNSSIAHSVNHRGRVTHALSDDALAQALMDSSSPTEGLDNFDEWTIDLRNLSMGEAFAQGAFGKLYRGTYNNEDVAIKILERPENDSTKAQLMEQQFQQEVMMLATLNHPNIVRFIGACHKPMVWCIVTEYAKGGSVRQFLMKRQNRSVPLKLAVKQALDVARGMAYVHGLGLIHRDLKSDNLLIFSDKSIKIADFGVARIEVLTEGMTPETGTYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVTKNVRPIIPNDCLPVLREIMTRCWDPNPDIRPPFTEIVGMLENAETEILTTVRKARFRCCMTQPMTAD* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0395 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Vra1g0395 416 SUPERFAMILY Protein kinase-like (PK-like) 117 389 IPR011009 -
Vra1g0395 416 Gene3D Phosphorylase Kinase; domain 1 124 217 - -
Vra1g0395 416 SMART serkin_6 135 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0395 416 Pfam Protein tyrosine and serine/threonine kinase 136 388 IPR001245 GO:0004672|GO:0006468
Vra1g0395 416 ProSiteProfiles Protein kinase domain profile. 135 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0395 416 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 2 407 - -
Vra1g0395 416 PANTHER SERINE-THREONINE PROTEIN KINASE 2 407 - -
Vra1g0395 416 PRINTS Tyrosine kinase catalytic domain signature 213 226 IPR001245 GO:0004672|GO:0006468
Vra1g0395 416 PRINTS Tyrosine kinase catalytic domain signature 251 269 IPR001245 GO:0004672|GO:0006468
Vra1g0395 416 PRINTS Tyrosine kinase catalytic domain signature 297 307 IPR001245 GO:0004672|GO:0006468
Vra1g0395 416 PRINTS Tyrosine kinase catalytic domain signature 316 338 IPR001245 GO:0004672|GO:0006468
Vra1g0395 416 PRINTS Tyrosine kinase catalytic domain signature 360 382 IPR001245 GO:0004672|GO:0006468
Vra1g0395 416 Gene3D Transferase(Phosphotransferase) domain 1 218 412 - -
Vra1g0395 416 CDD STKc_MAP3K-like 142 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0395 Vra-Chr1 5172596 5177159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0395 24 416 MAP Kinase Kinase Kinase AT2G24360 76.845 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vra1g0395 PK_Tyr_Ser-Thr 1.3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0395 - - gmx:100788536 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3355 7 52999895 53005926 Vra1g0395 1 5172596 5177159 PCT