Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0384 ATGAACGGGAAAGCCTCCATCTCTAAGGAGCTCAATGCCAAACACGCCAAGATCTTGGAAGGACTTCTTAAGCTGCCCGAGAACAGGGAATGTGCAGACTGCCGGAACAGGGCACCGCGATGGGCTAGTGTTAACCTAGGGATTTTCATTTGCATGCAATGTTCAGGAATTCACCGAAGCCTTGGAGTTCATATATCGAAGGTGCGGTCCACAACTTTAGATACGTGGTTACCGGACCAAGTTTCTTTCATGCAATTCATGGGCAATGTAAAGTCAAATAGGCACTGGGAAGCAGAAATGCCACCAAATTTTGATAGAAGTAAATTGGCAATGGAGAAGTTTATCCGTATGAAGTATGTAGAGAAAAGATGGGCTTCAAAAGATGAAGAGCAATCAACATCAAATGGAGGCATTATGAAGAACAACAGGAGACTCTCTCTTGAAGAAAGCATTCTTGCAAACCACGTCGTACAAATTCTACCCCCAATAACAAGACCTCGAGGGGGCTTTATAGACACGCAAAAGAAGAATTCTCCTCCATTTAAAAGGCCATCCTCATCTGTTGATTTTGACAAGTCTACAAAGAGCATCGCTACTGGGAACATTTTCAACTTGCTTTGCATCTATGACGATAACAAAAATTTCTCAACAGTGCCACCTTCAACTTGGGCAACATTTGATTGA 684 0.4298 MNGKASISKELNAKHAKILEGLLKLPENRECADCRNRAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQFMGNVKSNRHWEAEMPPNFDRSKLAMEKFIRMKYVEKRWASKDEEQSTSNGGIMKNNRRLSLEESILANHVVQILPPITRPRGGFIDTQKKNSPPFKRPSSSVDFDKSTKSIATGNIFNLLCIYDDNKNFSTVPPSTWATFD* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0384 227 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Vra1g0384 227 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 135 - -
Vra1g0384 227 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 137 227 - -
Vra1g0384 227 SMART arf_gap_3 16 133 IPR001164 GO:0005096
Vra1g0384 227 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Vra1g0384 227 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vra1g0384 227 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vra1g0384 227 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vra1g0384 227 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 137 227 IPR044520 GO:0005096
Vra1g0384 227 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 135 IPR044520 GO:0005096
Vra1g0384 227 MobiDBLite consensus disorder prediction 167 190 - -
Vra1g0384 227 CDD ArfGap 19 119 - -
Vra1g0384 227 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Vra1g0384 227 SUPERFAMILY ArfGap/RecO-like zinc finger 16 126 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0384 Vra-Chr1 5018933 5022634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0384 19 124 C2H2 Transcription Factor Family AT3G07940 46.429 3.84e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0384 K12486 - gmx:100803735 402.519