Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0380 ATGGAGTATGGGAGTGGAGGCGGTGGCTCTCAGTCTGCAGGGGAACACGATGCTTCCGATTCCCAGGAGAAGCGAAAGCGCTATCATCGTCATACTTCCACCCAGATTCAGAGGCTTGAGTCAATGTTCAGAGAGTGTCCCCATCCAGATGAGAAGCAAAGGTTGCAGTTAAGCAGAGAGTTAGGCTTGGCCCCTCGACAGATCAAGTTCTGGTTTCAGAACAGGAGGACCCAGATGAAGGCCCAGCACGAGAGAGCTGACAACTGTACTCTTCGGGCTGACAATGACAAGATACGCTGCGAGAACATAGCTATCAGAGAGGCTTTGAAAAATGTTATCTGCCCCTCTTGTGGTGGCCCTCCCCTCAATGACGATTCCTATTTTGACGACCAAAAGTTGCGATTAGAGAATGCTCACCTCAAAGAAGAGCTTGATAGAGTATCCAGCATTGCTGCCAAGTACATTGGAAGACCAATTTCCCAGCTCCCTCCTGTTCAGCCTATTCATTTATCGTCTCTCGACTTGTCGATGTCGTGTTTTGGAAACCAAGCGATGGTTGATCATGTTCTTGCACCTTCTCCTTCCCTTAATCTCGATCTTCTCTCTGCGGGGACTTCCTCTTCCGTGCCAAATTTTCCTTATCAGCCTCCTTACCTTTCGGACATGGACAAGTCCCTCATGTCCGACATTGCTTCCAATGCCATGGAAGAATTACTTCGGCTGGTGCAGACAAACGAACCCTTGTGGCTCAAGTCCAACGTCGATGGGAGAGACGTTCTTAATTCTGATGCCTACGAAAGAATTTTCCCCAAGCCCAATAGTCGCCCCAAGACTCCTAATCTTCGCCTTGAGGCATCACGAGATTCTGCAGTCGTATTAATGAATAGTTTGGCTTTGGTTGACATGTTTATGGACCCAAACAAGTGGACGGAACTTTTTCCCACTATTGTCTCAGTAGCAACGACTATTCAAGTCATATCTTCTGGGATGATGGGTGGTTCTTTGCAATTGATGTATGCGGAGTTGCAAGTGCTTTCTCCCCTTGTTTCTTCTCGGGAGTTCTACTTCCTTCGCTATTGCCAGCAAATTGAGAAAGGTACATGGGCAGTGGTGGACGTTTCTTACGATTTTCCTCAAGACAGCCACTTTGGTCCTCACTTTCGGTCTCGTCGTCGTCCTTCTGGTTGCTTGATCCAAGACATGCCGGACGGGCATTCCAAGATTACTTGGGTCGAACACGTAGAGATCGAAGACAAAACTCTGCCTCATCGGCTTTACAGAAATCTTATTTATAGTGGGATGGCATTTGGCGCTGAAAGATGGCTTGCAACTCTCCAGAGAATGTGTGAAAGACTTACATATCTGATGGTTACATCCGATTCAACCGTGGATAATCCTGGAGGAGTAATTTCATCTGCCGAGGGCAAGAGGAGCATGATGAAACTAGCTCAAAGGATGGTCACGAATTTTTGTGGCAGCATTGGCACTGCAAATGGCCGGCGATGGACCACAATCTCCGGGTTGAATGAAATATTAATCAGAGTCACTGTCCACAAAAGCTCAAATCCTGGACAACCTAATGGTGTGGTGCTAAGTGCAGCCACTACCATTTGGCTCCCCACCCCTCCACACACTGTCTTCAATTTCTTCAAGGACGAAACAAAAAGACCTCAGTGGGATGTTCTTTCCAACGGTAATGCAGTGCAAGAGGTTGCCCAGATAACCAATGGTCAAAATGCTGGTAACAGCATATCAGTTCTTCGAGCTTTCAACACGAGTCAAAACATGTTAATACTCCAAGAGAGCTGCATAGATTCGTCTGGTTCACTTGTGGTTTATTGCCCGGTTGATCTGCCATCGATCAACATAGCAATGAGTGGTGAAGACACTTCGTGCATTCCATTGCTACCAAATGGGTTTACCATTTTGCCAGATGGGGAGACGGAGCAGGAAGGAGACGGAGCATCAACCAGTTCAAACGCAAACAGGAACAAGGCAAGGTGTGGGGGTTCGCTAGTCACTGTTGCATTTCAGATTCTAGTGAGCTCCTCGCCATCTGCCAAGTTGAATATGGAAGTGACAACTGTTTGTAATCTCATTGGCTCCACTGTCCAGCAAATAAAGGCTTCATTGAGTTGTCCTACCTAG 2148 0.4725 MEYGSGGGGSQSAGEHDASDSQEKRKRYHRHTSTQIQRLESMFRECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCTLRADNDKIRCENIAIREALKNVICPSCGGPPLNDDSYFDDQKLRLENAHLKEELDRVSSIAAKYIGRPISQLPPVQPIHLSSLDLSMSCFGNQAMVDHVLAPSPSLNLDLLSAGTSSSVPNFPYQPPYLSDMDKSLMSDIASNAMEELLRLVQTNEPLWLKSNVDGRDVLNSDAYERIFPKPNSRPKTPNLRLEASRDSAVVLMNSLALVDMFMDPNKWTELFPTIVSVATTIQVISSGMMGGSLQLMYAELQVLSPLVSSREFYFLRYCQQIEKGTWAVVDVSYDFPQDSHFGPHFRSRRRPSGCLIQDMPDGHSKITWVEHVEIEDKTLPHRLYRNLIYSGMAFGAERWLATLQRMCERLTYLMVTSDSTVDNPGGVISSAEGKRSMMKLAQRMVTNFCGSIGTANGRRWTTISGLNEILIRVTVHKSSNPGQPNGVVLSAATTIWLPTPPHTVFNFFKDETKRPQWDVLSNGNAVQEVAQITNGQNAGNSISVLRAFNTSQNMLILQESCIDSSGSLVVYCPVDLPSINIAMSGEDTSCIPLLPNGFTILPDGETEQEGDGASTSSNANRNKARCGGSLVTVAFQILVSSSPSAKLNMEVTTVCNLIGSTVQQIKASLSCPT* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0380 715 MobiDBLite consensus disorder prediction 644 663 - -
Vra1g0380 715 SMART START_1 229 451 IPR002913 GO:0008289
Vra1g0380 715 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Vra1g0380 715 Gene3D - 228 451 IPR023393 -
Vra1g0380 715 CDD homeodomain 24 83 IPR001356 GO:0003677
Vra1g0380 715 SUPERFAMILY Bet v1-like 474 695 - -
Vra1g0380 715 Pfam START domain 230 451 IPR002913 GO:0008289
Vra1g0380 715 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Vra1g0380 715 MobiDBLite consensus disorder prediction 1 33 - -
Vra1g0380 715 SUPERFAMILY Bet v1-like 221 452 - -
Vra1g0380 715 CDD START_ArGLABRA2_like 224 450 - -
Vra1g0380 715 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 713 IPR042160 -
Vra1g0380 715 ProSiteProfiles START domain profile. 220 454 IPR002913 GO:0008289
Vra1g0380 715 SUPERFAMILY Homeodomain-like 8 82 IPR009057 -
Vra1g0380 715 Gene3D - 11 95 - -
Vra1g0380 715 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Vra1g0380 715 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 5 713 - -
Vra1g0380 715 SMART HOX_1 23 86 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0380 Vra-Chr1 4991008 4994755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0380 20 715 Homeobox Transcription Factor Family AT1G73360 62.659 0.0 866
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra1g0380 START 7.6e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0380 K09338 - gmx:100796042 1236.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0380 1 4991008 4994755 Vra1g0752 1 8863387 8868257 PCT