Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0377 ATGGCGGACTCTAACACAAGCTCGGTTGATGTGATTTTGGAGTTTCTTCGGAGGAACCGCTTCACGAGAGCGGAGGCAGCTCTGCGCAGTGAGATAAATAATCGCCCTGACTTGAATGGCTTCCTTCAGAAGCTCACATTGGAAGAAAAGGCCTCACGTGATGTGCCTCAAAGTAATAAGGGGAAGCCTATGATTGAGTTTCAAGGGGTGGACACTCTTGAAGTTTCTAAAGAACTGATCGTCACCGAAATCGAGTGTGGGAATGGTCTTAATGCCGCTGAAAGCAAATGGAAAACTGCTGCTCCCACTTTGGTGGAACGGAGTAAATCGGATGAAGCGGTTCGAACTAGTGATAAGAACTTCATTTTCTCCAAGACTTCAGAGGATGGGATGCTTGATTTATACTCTTGGAAGTTCAACCCTGGGAAAGCTCCTGTGGAGCCTTACCAAAACGATGCTGGTAGTAGGGCTAATACTACTTTGAGCTTGAATGCCACACTATCTGAACGATCAAAACGTCAAACTAATGAAGCTGTGGATCTAAGTGTTGCCAATACCAGTTCAAAGTCTGGGCAGGAAAATGCTGCTCTTGCTGACAAAAAACCTCTGTGGTCTGGAAGTAGTAGTAAAACCTCCGTGGATCTTAAGTACGACCTTGCGCAATGCAAAGAACCTATGGAGCTTGATCGGCAACTTAAATTCAATAGTTCATCTCTTAAAGGGAACTTTCCAGATAATCCCTGGTCAAAAATGGATGAGAATGTGAATTCGTCTTCAGATTCCTGCAAAAATTGTGTCAAGACGGTTTTCCCCTTCTCGAAAGGGGACGTGTCTACAAACTTCGATGGTGCCACTTATTCTGACAAAAAAGAGGAGAAAAAGAGAGTAGAAATTAGTGATGCCAGAACATCCATAAAAGAGCAGGTGGATGAATCAGGGAGGTCTATTTACTTGGTCAAGACACCTGTCAGTTCTGAACAAAAGTTGATTGGCAGCTTAAGATTTCCTCTTCCACCGGAAAATGAGAAGGAAGAATTTCCCAGGCTTCCTCCAGTTAAACTCAAGTCAGATGATAAGCCCTTGGTTGTTAACTGGGAAGAGAAGTTTGAGCGAGATGGGCCAACTTCAAAACCCCCTGGTACTGACAGCACTTTTCTTATTGGTTCATATCTGGATGTACCTATTGGACAAGAAATTAATCCTTCAGGTATGAGGAGGGCTACAGGGGGCAGTTGGTTATCTGTAAGTCAAGGGATAGCAGAGGATACATCTGATCTTGTATCCGGATTTGCTACAGTTGGCGACGGGTTGAGTGAATCTATTGACTATCCAAATGAATATTGGGACTCCGACGAATATGATGATGATGAGGATGTTGGCTACATGAGGCAACCCATTGACGATGAGACCTGGTTTTTGGCACATGAAATTGATTACCCTAGTGACAATGAAAAAGGGGCTGGCCATGAAAGTGTTCGGGATCATCAGGAAAGAGGTCTGGCCAAAGATGAGGATGACGATCAATCTTTTGCTGAGGAAGATTCTTACTTTTCTGGGGAGCGATATCTTCAGGCAAATAATGTTGAGCCAGTCACAGCTACTGATGATTCTATTGGTCTGACAGTTACTGAGTATGGAAGGACCAATGATAATGATTTAATGGCTCAATATGATGGACAATTGATGGATGAAGAAGAATTGAACCTTATGTGTGCAGAACCAGTCTGGCGGGGCTTTGTCCCTCAAACTAATGAACTCATCATGCTAGGAGATGGGAGGGTGTTGAATGATAATGTAAGATCACGGCTAGAGAACATCAAAATGGATGATGATCAACATGGTTCGGTTAGGTCAATTGGGGTAGGGATCAATAGTGATGTTGCAGATATTGGTAGTGAAGTGCGTGAAAGTTTGGTTGGTGGTAGTAGTGAAGGAGATGTAGAATATTTCCATGATGGTGATGCCAGGCTTGGTGGCCGGCACTCCCATCGTGATTTGGACAAGAAATCTACTAACAAATCAAATATAAGTAAGAACAATGACCTGAGTGAGTCAAATAAATATGTCATAGGATGTGACAGACCTGCACAGTTCCAGATAAAAACTCATGGTGATGGGAACTTCTCTTTTCCCCTATCTTTGAAGGATGGTGATATAATTCAGGCTTCCCTTGATAAGTCCCTGTGGGCAAATAACGACAATGCAGATGAAATTGATGACTGTCTTAGTGCATTTGTGGAAACTGATGACATGCTTGCTTCGTGGAGGCGAAAGAGTAGTGATTCATCACCTGCTAGAAGTTCTAGGGGTGATAATAATGCTAGCAATGTAAGATCTGCGAACTCTTCTCCAACAACAATTTCAAATTATGGATATTCAGAAAGAGAGGGTGTGAAGGTGGAGGAGGATGAAAAAACTGGAATTGCTAGGGAAGATGACCTAGGAGCAGAGGATGAAGAGGTAGCTGCTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACTTTCAATCTAAAGATTGTGCACAGGAAAAACAGAACTGGTTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTAATAGCTGGAAGGTATCATGTTACGGAGTATCTGGGATCTGCTGCATTTAGCAAAGCCATACAAGCTCATGACCTACATACAGGCATGGATGTTTGTGTTAAAATTATAAAGAACAACAAGGACTTTTTTGACCAAAGTCTTGATGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCTGGAGACAAGTATCACATTCTTCGATTATATGATTATTTCTATTATCGAGAACATTTGTTAATAGTATGTGAACTACTTAAAGCAAACTTGTACGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGTCGATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCATAGCCTTGGACTAATACACTGTGACTTGAAACCAGAGAATATTTTGGTTAAGAGCTATAGTAGATGTGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAGACGGATCACCTTTGCTCTTATGTTCAGTCAAGGTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTTCATATGATAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATGTCCTCTTCCAAAATGATTCGCCTGCAACATTACTTGCACGGGTGATTGGGATCATTGGTCCAATTGATCAAGGTATGCTTGCAAAAGGACGGGACACCTATAAGTACTTCACCAAAAATCATATGCTTTATGAAAGGAATCAGGAAACCAACAGGTTAGAATACTTGATTCCAAAAAAGACATCCTTGAGGCATAGATTGCCAATGGGAGACCAAGGCTTTATTGACTTTGTGGCTCACTTGCTTGAAGTCAACCCTAAGAAGCGACCCTCTGCATCTGAAGCCCTGAAGCATCCATGGTTATCGTACCCTTATGAACCCATATCATCTTGA 3552 0.42 MADSNTSSVDVILEFLRRNRFTRAEAALRSEINNRPDLNGFLQKLTLEEKASRDVPQSNKGKPMIEFQGVDTLEVSKELIVTEIECGNGLNAAESKWKTAAPTLVERSKSDEAVRTSDKNFIFSKTSEDGMLDLYSWKFNPGKAPVEPYQNDAGSRANTTLSLNATLSERSKRQTNEAVDLSVANTSSKSGQENAALADKKPLWSGSSSKTSVDLKYDLAQCKEPMELDRQLKFNSSSLKGNFPDNPWSKMDENVNSSSDSCKNCVKTVFPFSKGDVSTNFDGATYSDKKEEKKRVEISDARTSIKEQVDESGRSIYLVKTPVSSEQKLIGSLRFPLPPENEKEEFPRLPPVKLKSDDKPLVVNWEEKFERDGPTSKPPGTDSTFLIGSYLDVPIGQEINPSGMRRATGGSWLSVSQGIAEDTSDLVSGFATVGDGLSESIDYPNEYWDSDEYDDDEDVGYMRQPIDDETWFLAHEIDYPSDNEKGAGHESVRDHQERGLAKDEDDDQSFAEEDSYFSGERYLQANNVEPVTATDDSIGLTVTEYGRTNDNDLMAQYDGQLMDEEELNLMCAEPVWRGFVPQTNELIMLGDGRVLNDNVRSRLENIKMDDDQHGSVRSIGVGINSDVADIGSEVRESLVGGSSEGDVEYFHDGDARLGGRHSHRDLDKKSTNKSNISKNNDLSESNKYVIGCDRPAQFQIKTHGDGNFSFPLSLKDGDIIQASLDKSLWANNDNADEIDDCLSAFVETDDMLASWRRKSSDSSPARSSRGDNNASNVRSANSSPTTISNYGYSEREGVKVEEDEKTGIAREDDLGAEDEEVAAVQEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIDQGMLAKGRDTYKYFTKNHMLYERNQETNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVNPKKRPSASEALKHPWLSYPYEPISS* 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0377 1183 CDD PKc_DYRK_like 872 1174 - -
Vra1g0377 1183 MobiDBLite consensus disorder prediction 168 194 - -
Vra1g0377 1183 PANTHER DUAL SPECIFICITY PROTEIN KINASE 10 1181 - -
Vra1g0377 1183 ProSitePatterns Serine/Threonine protein kinases active-site signature. 998 1010 IPR008271 GO:0004672|GO:0006468
Vra1g0377 1183 MobiDBLite consensus disorder prediction 755 802 - -
Vra1g0377 1183 SMART serkin_6 872 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0377 1183 MobiDBLite consensus disorder prediction 479 512 - -
Vra1g0377 1183 MobiDBLite consensus disorder prediction 654 680 - -
Vra1g0377 1183 MobiDBLite consensus disorder prediction 654 674 - -
Vra1g0377 1183 Gene3D Transferase(Phosphotransferase) domain 1 926 1174 - -
Vra1g0377 1183 MobiDBLite consensus disorder prediction 757 792 - -
Vra1g0377 1183 MobiDBLite consensus disorder prediction 168 210 - -
Vra1g0377 1183 MobiDBLite consensus disorder prediction 479 505 - -
Vra1g0377 1183 Gene3D Phosphorylase Kinase; domain 1 866 953 - -
Vra1g0377 1183 PANTHER - 10 1181 - -
Vra1g0377 1183 SUPERFAMILY Protein kinase-like (PK-like) 861 1176 IPR011009 -
Vra1g0377 1183 ProSiteProfiles Protein kinase domain profile. 872 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0377 1183 Pfam Protein kinase domain 872 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0377 1183 Coils Coil 814 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0377 Vra-Chr1 4961853 4972816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0377 871 1169 MAP Kinase Gene Family AT5G19010 31.034 2.07e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vra1g0377 Pkinase 2.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0377 - - lang:109331412 1850.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0377 1 4961853 4972816 Vra1g0736 1 8669320 8676983 PCT