Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0375 ATGGCTTCCCTTGTAAGGATTAACTCATCTCCTTCCTCTCTTCCCACTTCTCAGCCCTTTTCCTTTCCCCAGAATGCTACCACTCCCACTAATAAAAGAAAGAGAAGGCCTGCTGGAACACCAGATCCAGATGCAGAAGTGGTGTCCCTCTCACCCAAGACCTTGCTTGAATCAGATCGTTTCGTCTGTGAGATCTGCAACCAGGGATTCCAGAGAGACCAGAACCTTCAGATGCACCGGCGCCGCCACAAGGTTCCCTGGAAGCTCTTGAAGAGGGAGACGCCACTGGTGAAGAAGCGAGTCTTCGTTTGCCCGGAGCCTACTTGCTTGCACCATGACCCGTGCCACGCTCTAGGTGATCTTGTCGGCATAAAGAAGCACTTCAGAAGAAAACACAGCAGTCACAAGCAATGGGTCTGCGAGAGATGCTCCAAAGGCTACGCAGTGCAGTCTGATTACAAAGCACATCTTAAAACGTGTGGCACCCGAGGCCACTCTTGCGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGCTTTATTGAACACCAAGACGCGTGCAACGTCGGGAGGTTGCTGCCAGAAACGCAGGCAGTGCAAGCTGCTGCATGCTTGTCTCGAACAGCTTCAAGCCCTTCTAGCGAAAACAATTTCAGCACAGGTGCCCCTTTGCAAATCGGTGTAATAATTCCGAAGCCGCCGGAAACAGTAGTAGAACCAGCCTTATTCAGCAACACTACCACGGCACAAACCAACAACGACAACAAAGTGAACAAGCTCCAGCCCAACCTTGAGCTTCAGCTCTCTACAGCCACTCCTATTGAAATGATCGGGGCTGCGTCAGGCACTGGCAATAAGAGAGAGGGAAATCCCTCTGCACAGTTGCAGTTATCGATAGGGTCATTGGAAAAAGGGTGCATGAGGGAGAAGTCATTGGGAGAAAGGGTTGAAGATGAGGCACGTGAGCAGCTGAGGATAGCGGTGGCGGAAAAAGCGTATGCGGAAGAGGCAAGGAAGCAAGCCAAGAGGCAGATGGAGCAGGCGGAACTGGAGTTCACTAATGCCAAAAGGATAAGACAACAAGCGCTAGCGGAACTGGACAAAGCCTGCGCCTTGAAGGACCACGCAATCAAACAGATCAATTCAACTATGCTTCAGATCACCTGCCTTGCTTGCAAGCACCATTTCCAGTCGCCAACCGTAACGTGTACTGCTCCTTCCGACCAGACCTCTTTCTTCTTCAGTTACATAACAACAGACGCTGCCCAAGTTGGAAAACATCGTGTCAAACCCATTAACTCATAG 1302 0.51 MASLVRINSSPSSLPTSQPFSFPQNATTPTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRFVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPLVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSSHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNVGRLLPETQAVQAAACLSRTASSPSSENNFSTGAPLQIGVIIPKPPETVVEPALFSNTTTAQTNNDNKVNKLQPNLELQLSTATPIEMIGAASGTGNKREGNPSAQLQLSIGSLEKGCMREKSLGERVEDEAREQLRIAVAEKAYAEEARKQAKRQMEQAELEFTNAKRIRQQALAELDKACALKDHAIKQINSTMLQITCLACKHHFQSPTVTCTAPSDQTSFFFSYITTDAAQVGKHRVKPINS* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0375 433 SUPERFAMILY beta-beta-alpha zinc fingers 61 83 IPR036236 -
Vra1g0375 433 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 14 422 - -
Vra1g0375 433 MobiDBLite consensus disorder prediction 1 48 - -
Vra1g0375 433 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Vra1g0375 433 PANTHER OS03G0310200 PROTEIN 14 422 IPR039288 GO:0009630
Vra1g0375 433 SMART c2h2final6 102 132 IPR013087 -
Vra1g0375 433 SMART c2h2final6 138 165 IPR013087 -
Vra1g0375 433 SMART c2h2final6 61 83 IPR013087 -
Vra1g0375 433 Coils Coil 330 364 - -
Vra1g0375 433 Gene3D Classic Zinc Finger 123 201 - -
Vra1g0375 433 MobiDBLite consensus disorder prediction 1 34 - -
Vra1g0375 433 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0375 Vra-Chr1 4946809 4949504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0375 28 418 C2H2 Transcription Factor Family AT2G01940 55.583 4.24e-142 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra1g0375 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0375 K25871 - gmx:100798167 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0375 1 4946809 4949504 Vra1g0725 1 8525172 8528465 PCT