Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0374 ATGCTAAGAAAGGTGTTGGGTTATATAGTTTATGCACTCTGCGCTTGGAAGCAGAAAGAGAGAGAAATGGAAGGAGGATCTGGCGAGAAGTGGAAGACAATCTACAGAGAGTGCTTGAGAAACCATGCAGCCAGTCTGGGAAGCTATGCCACCGACGGGTGTGGGGAGTTCACGGTGGACAGCGGGGGGCTGCAATGCGTGGCGTGTGGGTGCCACCGGAACTTTCACCGGAAAGTGAAGTATCCGGTCGGTCCGGAAAGTCCTGAAGCCATGGATTACGGTGGTGAGGGAGGGAGTAAGAAGCGGTTCAGGTCGAAATTCAGCACAGATCAGAAAGAGAAGATGCTGGCGTTTGCGGAGAAAATTGGTTGGAAGCTTCAGAGGAAGGATCTGGATGATGAGATTGAGAGGTTCTGCAGAAGCATTGGAGTTAGTAGACAAGTTTTCAAAGTTTGGATGCATAACCATAAGAACTCTTCTTCCTCTTCTTCTGCTTCAGCTTCAGCTTCAGCTTCCACAGGAAACATCTCCTCCCTCACCCATTAA 546 0.4963 MLRKVLGYIVYALCAWKQKEREMEGGSGEKWKTIYRECLRNHAASLGSYATDGCGEFTVDSGGLQCVACGCHRNFHRKVKYPVGPESPEAMDYGGEGGSKKRFRSKFSTDQKEKMLAFAEKIGWKLQRKDLDDEIERFCRSIGVSRQVFKVWMHNHKNSSSSSSASASASASTGNISSLTH* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0374 181 Pfam ZF-HD protein dimerisation region 33 79 IPR006456 -
Vra1g0374 181 SUPERFAMILY Homeodomain-like 91 158 IPR009057 -
Vra1g0374 181 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 30 167 - -
Vra1g0374 181 MobiDBLite consensus disorder prediction 159 181 - -
Vra1g0374 181 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 35 78 IPR006456 -
Vra1g0374 181 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 30 167 - -
Vra1g0374 181 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 100 158 IPR006455 -
Vra1g0374 181 Gene3D - 87 164 - -
Vra1g0374 181 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 35 79 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0374 Vra-Chr1 4930240 4930931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0374 32 159 ZF-HD Transcription Factor Family AT4G24660 42.197 2.00e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vra1g0374 ZF-HD_dimer 9.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0374 - - vra:106767737 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0374 1 4930240 4930931 Vra1g0722 1 8480212 8481253 PCT