Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra1g0367 | ATGAGCTCGCAAGAGCGAAGCCAGCGGTCTAGGGTTCCTCGTCAAGAATGGATTCGTCGAGGATCTACCGATCAGAGTCAGACTCAGATGCAGAATCAGAATCAAAATGGTGCCGCCGCCTCCACCGCTGCCGGTTCCTCCAATGCAACATATCGCCATAGGAGGAGCGGTCCTATTCCTAGTCACAATCCCAATCCTAATCCTAATCCCAATCCCAGTCCTAATCCCAATCCCAATCCGAAGAATAATGTGCAGAGGAGATTCAATTCGAGGGATTCTAATTTGCCCCAGCTGTTGCAAGAGATTCAGGAGAAGCTCATGAAAGGTGCGGTGGAATGCATGATTTGCTGTGACATGGTGCGGAGGTCTGCGCCAATCTGGTCTTGCTCTAGTTGCTTCTCCATCTTTCACCTTAATTGTATAAAGAAGTGGGCGCGTGCTCCCACTTCTGTGGATGTGTCTGTGGACAAGAATCAGCGGTTCAATTGGCGGTGCCCTGGTTGTCAATCTGTGCAGCTCACATCATCCAAGGAGATTCGGTATGTTTGCTTCTGTGGGAAGAGGCCTGACCCCCCTTCCGACTTGTATCTCTTGCCACATTCCTGTGGAGAACCATGTGCCAAACCCCTTGAAAGGGAGCTTGGGGGGGATAAGGAGGTTCTTTGTCCTCATGTTTGTGTCTTGCAATGCCATCCCGGTCCTTGCCCTCCTTGCAAAGCATTTGCACCCCCACGTTTGTGTCCTTGTGGGAAGAAAAATGTTACCACCCGTTGTTCTGACCGCCAGTCCGTTCTTACCTGTGGCCAGCGCTGTGAAAAGCTTCTTGAATGTGGGCGGCATCGGTGTGAGCAAATCTGTCATCTGGGACCTTGTGATCCTTGTAAGATTCCTGTCAATGCCTCTTGCTTTTGCAGTAAAAGGACGGAACTCATTCTTTGTGGGGAAATGGTTCTGAAAGGTGAAATCAAAACCGAAGGTGGAGTTTTCTCTTGCGGTTCAAACTGTGGAAAGAAACTTGGTTGCGGTAATCATATTTGTATTGAGACGTGTCATCCCGGCAGCTGTGGGGAGTGTGGATTGTTACCATCCCATATTAAGACATGCTGTTGTGGGAAAACTAGATTGAAGCAGGAACGACAGAGTTGTTTAGACCCTATACCTACCTGTTCACAAGTATGTGGGAAGACCCTTCCTTGCGGGATTCATCACTGTGAAGAGCCATGCCACCCTGGGGATTGTTCTCCTTGTTTGGTTCTAGTCTCCCAGAAGTGTCGATGTGGCTCTACTTCCCGAACTGTGGAGTGCTGTAAGACAAAAGTGGACGCTGTGAAATTTACTTGTGAAAAGCCTTGTGGGCAGAAAAGGAATTGTGGAAGGCATAGATGCAGTGAACGTTGTTGTCCACTTTCTAATCCAAATAATATTCAAATTGCGGATTGGGATCCACACTTCTGTTCATTACCATGTGGAAAGAAGCTAAGGTGTGGGCAGCATGCATGTGAATCCCTATGCCACAGTGGTCATTGTCCACCTTGTCTTGAAACTATATTTACTGATTTGACATGTGCTTGTGGCAAGACTTCAATCCCTCCTCCATTGCCTTGCGGCACACCTCCTCCCTCGTGTCAGCTTCCATGTTCTGTTCCTCAGCCTTGTTCACATCCAGCTTCTCACAGCTGCCATTTTGGGGATTGCCCTCCTTGTTCGGTGCCTGTAGCAAAAGAATGTATTGGTGGGCATGTAATTCTTCGGAACATTCCCTGTGGTTCAAAGGATATTAGATGCAATAAACTATGTGGGAAGACCAGACAGTGCGGTTTACATGCATGTGGTAGAACATGTCACCTCCCACCTTGTGATAACCCATCTACAGTGCCGGGTACCCGTGCCTCTTGCGGGCAAACATGTGGTGCTCCAAGAAGAGACTGCCGCCATACATGTACAGCTCCTTGTCACCCTTCAACTTCATGTCCAGACACGAGATGCGAATTCTCTGTCACAATTACATGTTCTTGTGGCCGAATAACAGCGAATGTTCCTTGTGATGCTGGTGGAAGCTCTGCAAATTATAATGCTGATGCTGTACACGAAGCTTCCATTATCCAAAAGTTGCCTGTGTTGCTTCAACCTGTTGCTGCAAATGGCAAGAAAGTTCCTCTTGGACAAAGAAAACTGATGTGTAATGATGACTGTGCTAAGTTAGAACGTAAACGAGTACTTGCAGATGCCTTTGAGATAAACGCTCCAAATCTGGATTCCCTCCATTTTGGTGACAATCCTGTTGCTTCTGAATTGCTTGTTGACATGTTGAGACGTGATCCTAAATGGGTTTTATCTGTTGAGGAGAGATGCAAGGTTTTGGTTCTTGGCAAGAACAGGGGAAATACACAAGGTCCAAAAATCCATATTTTCTCTCCCATGTTAAAGGACAAAAGAGATGCAGTGAGGATCATTGCTGAAAGATGGAAGCTTGCGGTGTATGTAGCTGGTCGTGAGCCAAAGCGTTTTGTAGTTGTTCATGTTACCCCCAAATCAAGAGCTCCTGCTCGTGTGCTTGGGGTTAAGGGAACTACAACTGTAAATGCACCCCTTCCTCCTGCATTCGATTCTTTAGTAGATATGGATCCTCGGCTTGTTGTCTCTTTTCTAGACTTACCAAGGGAGGCAGATATCAGTGCACTGGTGCTGAGATTTGGTGGTGAGTGTGAACTTGTTTGGTTAAATGACAAAAATGCACTGGCTGTTTTTAATGATCCAGCCCGAGCTGCAACTGCAATGAGGAGGTTGGATCATGGTACTGTTTATCAGGGAGCCGTGGTAGTGATTGTTCCGAATGTTGGGGCATCAGCAGCATCTTCAGCCACCAATGCTTGGGGAGGATCTGGGACAATGAAAGGAGGAGGATCACTGGCAGCATTGAAGGGGGGTAATCCGTGGAAAAAAGAAGTTCAAGAGCCAGGTTGGAAAGATTCTTGGGGTGAGGAGGAGTGGGCTACTGGTTCTGCTAATGTGCATTTGCCTATTCAGAAGAAAGATTCTCTCATATCTACTTCAGTAAACCCTTGGAGTGTCTTAAATCAAGAATCTTCTTCAAGTTCATCTGCTGCAGCTGTTAAAGTTGATGTTTCCAGGGAACACTCAGAAAGTAGTGCTGTCACAAACTTGGATCCTCATGATGGCGGTTCAAATCTAGGACAGCATGCAGGAAACTTGGATACTTTAGAAGATTCTGAGGTAGTAGATGATTGGGAGAAGGCTTGTGAGTAG | 3267 | 0.4692 | MSSQERSQRSRVPRQEWIRRGSTDQSQTQMQNQNQNGAAASTAAGSSNATYRHRRSGPIPSHNPNPNPNPNPSPNPNPNPKNNVQRRFNSRDSNLPQLLQEIQEKLMKGAVECMICCDMVRRSAPIWSCSSCFSIFHLNCIKKWARAPTSVDVSVDKNQRFNWRCPGCQSVQLTSSKEIRYVCFCGKRPDPPSDLYLLPHSCGEPCAKPLERELGGDKEVLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKNVTTRCSDRQSVLTCGQRCEKLLECGRHRCEQICHLGPCDPCKIPVNASCFCSKRTELILCGEMVLKGEIKTEGGVFSCGSNCGKKLGCGNHICIETCHPGSCGECGLLPSHIKTCCCGKTRLKQERQSCLDPIPTCSQVCGKTLPCGIHHCEEPCHPGDCSPCLVLVSQKCRCGSTSRTVECCKTKVDAVKFTCEKPCGQKRNCGRHRCSERCCPLSNPNNIQIADWDPHFCSLPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGKTSIPPPLPCGTPPPSCQLPCSVPQPCSHPASHSCHFGDCPPCSVPVAKECIGGHVILRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHLPPCDNPSTVPGTRASCGQTCGAPRRDCRHTCTAPCHPSTSCPDTRCEFSVTITCSCGRITANVPCDAGGSSANYNADAVHEASIIQKLPVLLQPVAANGKKVPLGQRKLMCNDDCAKLERKRVLADAFEINAPNLDSLHFGDNPVASELLVDMLRRDPKWVLSVEERCKVLVLGKNRGNTQGPKIHIFSPMLKDKRDAVRIIAERWKLAVYVAGREPKRFVVVHVTPKSRAPARVLGVKGTTTVNAPLPPAFDSLVDMDPRLVVSFLDLPREADISALVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLDHGTVYQGAVVVIVPNVGASAASSATNAWGGSGTMKGGGSLAALKGGNPWKKEVQEPGWKDSWGEEEWATGSANVHLPIQKKDSLISTSVNPWSVLNQESSSSSSAAAVKVDVSREHSESSAVTNLDPHDGGSNLGQHAGNLDTLEDSEVVDDWEKACE* | 1089 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra1g0367 | 1088 | MobiDBLite | consensus disorder prediction | 969 | 990 | - | - | |
Vra1g0367 | 1088 | CDD | NF-X1-zinc-finger | 267 | 315 | - | - | |
Vra1g0367 | 1088 | SUPERFAMILY | RING/U-box | 103 | 172 | - | - | |
Vra1g0367 | 1088 | MobiDBLite | consensus disorder prediction | 19 | 54 | - | - | |
Vra1g0367 | 1088 | SMART | znfxneu3 | 643 | 664 | IPR000967 | GO:0005634|GO:0008270 | |
Vra1g0367 | 1088 | SMART | znfxneu3 | 552 | 570 | IPR000967 | GO:0005634|GO:0008270 | |
Vra1g0367 | 1088 | SMART | znfxneu3 | 605 | 634 | IPR000967 | GO:0005634|GO:0008270 | |
Vra1g0367 | 1088 | SMART | znfxneu3 | 222 | 240 | IPR000967 | GO:0005634|GO:0008270 | |
Vra1g0367 | 1088 | SMART | znfxneu3 | 495 | 514 | IPR000967 | GO:0005634|GO:0008270 | |
Vra1g0367 | 1088 | SMART | znfxneu3 | 341 | 360 | IPR000967 | GO:0005634|GO:0008270 | |
Vra1g0367 | 1088 | SMART | znfxneu3 | 277 | 296 | IPR000967 | GO:0005634|GO:0008270 | |
Vra1g0367 | 1088 | SMART | znfxneu3 | 457 | 487 | IPR000967 | GO:0005634|GO:0008270 | |
Vra1g0367 | 1088 | SMART | znfxneu3 | 399 | 418 | IPR000967 | GO:0005634|GO:0008270 | |
Vra1g0367 | 1088 | PANTHER | NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 | 3 | 1085 | - | - | |
Vra1g0367 | 1088 | CDD | NF-X1-zinc-finger | 542 | 590 | - | - | |
Vra1g0367 | 1088 | CDD | NF-X1-zinc-finger | 331 | 374 | - | - | |
Vra1g0367 | 1088 | MobiDBLite | consensus disorder prediction | 1 | 88 | - | - | |
Vra1g0367 | 1088 | MobiDBLite | consensus disorder prediction | 1026 | 1088 | - | - | |
Vra1g0367 | 1088 | Pfam | NF-X1 type zinc finger | 559 | 569 | IPR000967 | GO:0005634|GO:0008270 | |
Vra1g0367 | 1088 | Pfam | NF-X1 type zinc finger | 605 | 620 | IPR000967 | GO:0005634|GO:0008270 | |
Vra1g0367 | 1088 | Pfam | NF-X1 type zinc finger | 457 | 468 | IPR000967 | GO:0005634|GO:0008270 | |
Vra1g0367 | 1088 | Pfam | NF-X1 type zinc finger | 224 | 239 | IPR000967 | GO:0005634|GO:0008270 | |
Vra1g0367 | 1088 | Pfam | NF-X1 type zinc finger | 636 | 657 | IPR000967 | GO:0005634|GO:0008270 | |
Vra1g0367 | 1088 | Pfam | NF-X1 type zinc finger | 277 | 295 | IPR000967 | GO:0005634|GO:0008270 | |
Vra1g0367 | 1088 | Pfam | NF-X1 type zinc finger | 399 | 416 | IPR000967 | GO:0005634|GO:0008270 | |
Vra1g0367 | 1088 | Pfam | NF-X1 type zinc finger | 495 | 512 | IPR000967 | GO:0005634|GO:0008270 | |
Vra1g0367 | 1088 | Pfam | NF-X1 type zinc finger | 341 | 358 | IPR000967 | GO:0005634|GO:0008270 | |
Vra1g0367 | 1088 | MobiDBLite | consensus disorder prediction | 61 | 79 | - | - | |
Vra1g0367 | 1088 | ProSiteProfiles | Zinc finger PHD-type profile. | 110 | 171 | IPR019787 | - | |
Vra1g0367 | 1088 | CDD | NF-X1-zinc-finger | 202 | 260 | - | - | |
Vra1g0367 | 1088 | CDD | NF-X1-zinc-finger | 485 | 528 | - | - | |
Vra1g0367 | 1088 | CDD | RING-CH-C4HC3_NFX1 | 112 | 169 | - | - | |
Vra1g0367 | 1088 | ProSiteProfiles | Zinc finger RING-type profile. | 113 | 169 | IPR001841 | - | |
Vra1g0367 | 1088 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 | 3 | 1085 | IPR034078 | GO:0003700 | |
Vra1g0367 | 1088 | MobiDBLite | consensus disorder prediction | 1047 | 1070 | - | - | |
Vra1g0367 | 1088 | CDD | NF-X1-zinc-finger | 389 | 437 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra1g0367 | Vra-Chr1 | 4879249 | 4883366 | Dispersed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-X1 | Vra1g0367 | zf-NF-X1 | 1.5e+02 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra1g0367 | K12236 | - | gmx:106799700 | 1892.86 |