Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0367 ATGAGCTCGCAAGAGCGAAGCCAGCGGTCTAGGGTTCCTCGTCAAGAATGGATTCGTCGAGGATCTACCGATCAGAGTCAGACTCAGATGCAGAATCAGAATCAAAATGGTGCCGCCGCCTCCACCGCTGCCGGTTCCTCCAATGCAACATATCGCCATAGGAGGAGCGGTCCTATTCCTAGTCACAATCCCAATCCTAATCCTAATCCCAATCCCAGTCCTAATCCCAATCCCAATCCGAAGAATAATGTGCAGAGGAGATTCAATTCGAGGGATTCTAATTTGCCCCAGCTGTTGCAAGAGATTCAGGAGAAGCTCATGAAAGGTGCGGTGGAATGCATGATTTGCTGTGACATGGTGCGGAGGTCTGCGCCAATCTGGTCTTGCTCTAGTTGCTTCTCCATCTTTCACCTTAATTGTATAAAGAAGTGGGCGCGTGCTCCCACTTCTGTGGATGTGTCTGTGGACAAGAATCAGCGGTTCAATTGGCGGTGCCCTGGTTGTCAATCTGTGCAGCTCACATCATCCAAGGAGATTCGGTATGTTTGCTTCTGTGGGAAGAGGCCTGACCCCCCTTCCGACTTGTATCTCTTGCCACATTCCTGTGGAGAACCATGTGCCAAACCCCTTGAAAGGGAGCTTGGGGGGGATAAGGAGGTTCTTTGTCCTCATGTTTGTGTCTTGCAATGCCATCCCGGTCCTTGCCCTCCTTGCAAAGCATTTGCACCCCCACGTTTGTGTCCTTGTGGGAAGAAAAATGTTACCACCCGTTGTTCTGACCGCCAGTCCGTTCTTACCTGTGGCCAGCGCTGTGAAAAGCTTCTTGAATGTGGGCGGCATCGGTGTGAGCAAATCTGTCATCTGGGACCTTGTGATCCTTGTAAGATTCCTGTCAATGCCTCTTGCTTTTGCAGTAAAAGGACGGAACTCATTCTTTGTGGGGAAATGGTTCTGAAAGGTGAAATCAAAACCGAAGGTGGAGTTTTCTCTTGCGGTTCAAACTGTGGAAAGAAACTTGGTTGCGGTAATCATATTTGTATTGAGACGTGTCATCCCGGCAGCTGTGGGGAGTGTGGATTGTTACCATCCCATATTAAGACATGCTGTTGTGGGAAAACTAGATTGAAGCAGGAACGACAGAGTTGTTTAGACCCTATACCTACCTGTTCACAAGTATGTGGGAAGACCCTTCCTTGCGGGATTCATCACTGTGAAGAGCCATGCCACCCTGGGGATTGTTCTCCTTGTTTGGTTCTAGTCTCCCAGAAGTGTCGATGTGGCTCTACTTCCCGAACTGTGGAGTGCTGTAAGACAAAAGTGGACGCTGTGAAATTTACTTGTGAAAAGCCTTGTGGGCAGAAAAGGAATTGTGGAAGGCATAGATGCAGTGAACGTTGTTGTCCACTTTCTAATCCAAATAATATTCAAATTGCGGATTGGGATCCACACTTCTGTTCATTACCATGTGGAAAGAAGCTAAGGTGTGGGCAGCATGCATGTGAATCCCTATGCCACAGTGGTCATTGTCCACCTTGTCTTGAAACTATATTTACTGATTTGACATGTGCTTGTGGCAAGACTTCAATCCCTCCTCCATTGCCTTGCGGCACACCTCCTCCCTCGTGTCAGCTTCCATGTTCTGTTCCTCAGCCTTGTTCACATCCAGCTTCTCACAGCTGCCATTTTGGGGATTGCCCTCCTTGTTCGGTGCCTGTAGCAAAAGAATGTATTGGTGGGCATGTAATTCTTCGGAACATTCCCTGTGGTTCAAAGGATATTAGATGCAATAAACTATGTGGGAAGACCAGACAGTGCGGTTTACATGCATGTGGTAGAACATGTCACCTCCCACCTTGTGATAACCCATCTACAGTGCCGGGTACCCGTGCCTCTTGCGGGCAAACATGTGGTGCTCCAAGAAGAGACTGCCGCCATACATGTACAGCTCCTTGTCACCCTTCAACTTCATGTCCAGACACGAGATGCGAATTCTCTGTCACAATTACATGTTCTTGTGGCCGAATAACAGCGAATGTTCCTTGTGATGCTGGTGGAAGCTCTGCAAATTATAATGCTGATGCTGTACACGAAGCTTCCATTATCCAAAAGTTGCCTGTGTTGCTTCAACCTGTTGCTGCAAATGGCAAGAAAGTTCCTCTTGGACAAAGAAAACTGATGTGTAATGATGACTGTGCTAAGTTAGAACGTAAACGAGTACTTGCAGATGCCTTTGAGATAAACGCTCCAAATCTGGATTCCCTCCATTTTGGTGACAATCCTGTTGCTTCTGAATTGCTTGTTGACATGTTGAGACGTGATCCTAAATGGGTTTTATCTGTTGAGGAGAGATGCAAGGTTTTGGTTCTTGGCAAGAACAGGGGAAATACACAAGGTCCAAAAATCCATATTTTCTCTCCCATGTTAAAGGACAAAAGAGATGCAGTGAGGATCATTGCTGAAAGATGGAAGCTTGCGGTGTATGTAGCTGGTCGTGAGCCAAAGCGTTTTGTAGTTGTTCATGTTACCCCCAAATCAAGAGCTCCTGCTCGTGTGCTTGGGGTTAAGGGAACTACAACTGTAAATGCACCCCTTCCTCCTGCATTCGATTCTTTAGTAGATATGGATCCTCGGCTTGTTGTCTCTTTTCTAGACTTACCAAGGGAGGCAGATATCAGTGCACTGGTGCTGAGATTTGGTGGTGAGTGTGAACTTGTTTGGTTAAATGACAAAAATGCACTGGCTGTTTTTAATGATCCAGCCCGAGCTGCAACTGCAATGAGGAGGTTGGATCATGGTACTGTTTATCAGGGAGCCGTGGTAGTGATTGTTCCGAATGTTGGGGCATCAGCAGCATCTTCAGCCACCAATGCTTGGGGAGGATCTGGGACAATGAAAGGAGGAGGATCACTGGCAGCATTGAAGGGGGGTAATCCGTGGAAAAAAGAAGTTCAAGAGCCAGGTTGGAAAGATTCTTGGGGTGAGGAGGAGTGGGCTACTGGTTCTGCTAATGTGCATTTGCCTATTCAGAAGAAAGATTCTCTCATATCTACTTCAGTAAACCCTTGGAGTGTCTTAAATCAAGAATCTTCTTCAAGTTCATCTGCTGCAGCTGTTAAAGTTGATGTTTCCAGGGAACACTCAGAAAGTAGTGCTGTCACAAACTTGGATCCTCATGATGGCGGTTCAAATCTAGGACAGCATGCAGGAAACTTGGATACTTTAGAAGATTCTGAGGTAGTAGATGATTGGGAGAAGGCTTGTGAGTAG 3267 0.4692 MSSQERSQRSRVPRQEWIRRGSTDQSQTQMQNQNQNGAAASTAAGSSNATYRHRRSGPIPSHNPNPNPNPNPSPNPNPNPKNNVQRRFNSRDSNLPQLLQEIQEKLMKGAVECMICCDMVRRSAPIWSCSSCFSIFHLNCIKKWARAPTSVDVSVDKNQRFNWRCPGCQSVQLTSSKEIRYVCFCGKRPDPPSDLYLLPHSCGEPCAKPLERELGGDKEVLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKNVTTRCSDRQSVLTCGQRCEKLLECGRHRCEQICHLGPCDPCKIPVNASCFCSKRTELILCGEMVLKGEIKTEGGVFSCGSNCGKKLGCGNHICIETCHPGSCGECGLLPSHIKTCCCGKTRLKQERQSCLDPIPTCSQVCGKTLPCGIHHCEEPCHPGDCSPCLVLVSQKCRCGSTSRTVECCKTKVDAVKFTCEKPCGQKRNCGRHRCSERCCPLSNPNNIQIADWDPHFCSLPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGKTSIPPPLPCGTPPPSCQLPCSVPQPCSHPASHSCHFGDCPPCSVPVAKECIGGHVILRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHLPPCDNPSTVPGTRASCGQTCGAPRRDCRHTCTAPCHPSTSCPDTRCEFSVTITCSCGRITANVPCDAGGSSANYNADAVHEASIIQKLPVLLQPVAANGKKVPLGQRKLMCNDDCAKLERKRVLADAFEINAPNLDSLHFGDNPVASELLVDMLRRDPKWVLSVEERCKVLVLGKNRGNTQGPKIHIFSPMLKDKRDAVRIIAERWKLAVYVAGREPKRFVVVHVTPKSRAPARVLGVKGTTTVNAPLPPAFDSLVDMDPRLVVSFLDLPREADISALVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLDHGTVYQGAVVVIVPNVGASAASSATNAWGGSGTMKGGGSLAALKGGNPWKKEVQEPGWKDSWGEEEWATGSANVHLPIQKKDSLISTSVNPWSVLNQESSSSSSAAAVKVDVSREHSESSAVTNLDPHDGGSNLGQHAGNLDTLEDSEVVDDWEKACE* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0367 1088 MobiDBLite consensus disorder prediction 969 990 - -
Vra1g0367 1088 CDD NF-X1-zinc-finger 267 315 - -
Vra1g0367 1088 SUPERFAMILY RING/U-box 103 172 - -
Vra1g0367 1088 MobiDBLite consensus disorder prediction 19 54 - -
Vra1g0367 1088 SMART znfxneu3 643 664 IPR000967 GO:0005634|GO:0008270
Vra1g0367 1088 SMART znfxneu3 552 570 IPR000967 GO:0005634|GO:0008270
Vra1g0367 1088 SMART znfxneu3 605 634 IPR000967 GO:0005634|GO:0008270
Vra1g0367 1088 SMART znfxneu3 222 240 IPR000967 GO:0005634|GO:0008270
Vra1g0367 1088 SMART znfxneu3 495 514 IPR000967 GO:0005634|GO:0008270
Vra1g0367 1088 SMART znfxneu3 341 360 IPR000967 GO:0005634|GO:0008270
Vra1g0367 1088 SMART znfxneu3 277 296 IPR000967 GO:0005634|GO:0008270
Vra1g0367 1088 SMART znfxneu3 457 487 IPR000967 GO:0005634|GO:0008270
Vra1g0367 1088 SMART znfxneu3 399 418 IPR000967 GO:0005634|GO:0008270
Vra1g0367 1088 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 3 1085 - -
Vra1g0367 1088 CDD NF-X1-zinc-finger 542 590 - -
Vra1g0367 1088 CDD NF-X1-zinc-finger 331 374 - -
Vra1g0367 1088 MobiDBLite consensus disorder prediction 1 88 - -
Vra1g0367 1088 MobiDBLite consensus disorder prediction 1026 1088 - -
Vra1g0367 1088 Pfam NF-X1 type zinc finger 559 569 IPR000967 GO:0005634|GO:0008270
Vra1g0367 1088 Pfam NF-X1 type zinc finger 605 620 IPR000967 GO:0005634|GO:0008270
Vra1g0367 1088 Pfam NF-X1 type zinc finger 457 468 IPR000967 GO:0005634|GO:0008270
Vra1g0367 1088 Pfam NF-X1 type zinc finger 224 239 IPR000967 GO:0005634|GO:0008270
Vra1g0367 1088 Pfam NF-X1 type zinc finger 636 657 IPR000967 GO:0005634|GO:0008270
Vra1g0367 1088 Pfam NF-X1 type zinc finger 277 295 IPR000967 GO:0005634|GO:0008270
Vra1g0367 1088 Pfam NF-X1 type zinc finger 399 416 IPR000967 GO:0005634|GO:0008270
Vra1g0367 1088 Pfam NF-X1 type zinc finger 495 512 IPR000967 GO:0005634|GO:0008270
Vra1g0367 1088 Pfam NF-X1 type zinc finger 341 358 IPR000967 GO:0005634|GO:0008270
Vra1g0367 1088 MobiDBLite consensus disorder prediction 61 79 - -
Vra1g0367 1088 ProSiteProfiles Zinc finger PHD-type profile. 110 171 IPR019787 -
Vra1g0367 1088 CDD NF-X1-zinc-finger 202 260 - -
Vra1g0367 1088 CDD NF-X1-zinc-finger 485 528 - -
Vra1g0367 1088 CDD RING-CH-C4HC3_NFX1 112 169 - -
Vra1g0367 1088 ProSiteProfiles Zinc finger RING-type profile. 113 169 IPR001841 -
Vra1g0367 1088 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 3 1085 IPR034078 GO:0003700
Vra1g0367 1088 MobiDBLite consensus disorder prediction 1047 1070 - -
Vra1g0367 1088 CDD NF-X1-zinc-finger 389 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0367 Vra-Chr1 4879249 4883366 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Vra1g0367 zf-NF-X1 1.5e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0367 K12236 - gmx:106799700 1892.86