Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0366 ATGCTGCCTCACAAGCACACTCTCGTGGTTGTGGCGGCCACGCTGGCGCTCATGCTCGCAGCAACAGATGCAGATCTGGCCGCCGAGCGAGCCGCATTGCTCGCTCTCCGCTCTGCGGTCGGCGGCAGAACCCTCTTCTGGAACGCCACCAGGGACAGCCCCTGCACCTGGGCTGGTGTCCAATGCGAGCGCGACCACGTCGTCGAGCTCCACCTTCCCGGCGTCGCTCTCTCCGGCCAAATCCCTGTCGGCATATTCGGCAATCTGACACAGTTGCGCACCCTCAGTCTCCGCTTCAACGCGCTGCGGGGTTCCCTGCCTTCAGATCTGGCGAAGTGCGTGAACCTTCGGAACCTGTACATTCAGCGGAACCTGCTGAGCGGCGCTATCCCGTCGTTCTTGTTCGAGTTACCAGACTTGGTTCGCTTGAACATGGGCTTCAACAACTTCTCAGGCCCATTTCCGACCGGCTTCAACAGCCTGACCCGGTTGAAGACTCTGTTTGTGGAAAACAACCAGCTCTCCGGCCCAATCCCCGACTTGAGCAAACTGAGCCTGGATCAGTTCAACGTCTCCTACAACCTCCTCAACGGCTCTGTCCCTCTCAAGCTTCGGACATTCCCTCAGGATTCCTTTCTTGGCAACTCCCTCTGCGGCCGTCCACTCTCTCTCTGCCCCGGAGATATCGCCGATCCTATCTCCGTCGACAACAACTCCAAGCCAAACAGCCACAACTCCCACAAGTTATCTGCCGGCGCCATTGCGGGGATTGTTGTCGGATCGGTCGTGTTTCTTCTGCTGCTCGTCTTCCTCTTCATTTTCCTGTGTCGGAGCAAAACTGCCAAGAAGACCAGCGCGGTCGACATTGCTACTGTCAAACATCCCGAGGCCGATGCTCCGGTTCTTGCGGAGAAGGGGATTCCGGATGTCGAGAACGGCGGTCATGCCAACGGCAATTCTGCGGCGGCTGTGGCTGCGGTTTCGGCGGGGAACAAGGCTGAAGTGAACGGTGGTGGGGCAGCGAAGAAGTTGGTGTTTTTCGGGAATGCGGCAAGGGCGTTCGATTTGGAGGATTTGCTCAGGGCTTCGGCGGAGGTTTTGGGGAAAGGGACTTTCGGGACGGCGTATAAGGCGGTGCTGGAGGCAGGGCCAGTGGTGGCGGTGAAGAGGTTGAAGGATGTGACGATTTCTGAGAAGGAGTTTAAGGAGAAGATTGAAGCGGTGGGAGCAATGGATCATGAGAGTTTGGTTCCTCTCAGAGCTTTCTATTTCAGTAGGGATGAGAAGCTCCTTGTGTATGATTACATGCCCATGGGAAGCTTGTCTGCACTTTTACATGGAAACAAAGGGGCGGGTAGGACTCCCCTGAATTGGGAAGTGAGATCAGGCATTGCGCTTGGAGCCGCCCGTGGCATTGAGTACCTGCATTCACGAGGGCCTAATGTTTCTCATGGGAATATAAAGTCATCCAACATCCTCTTAACCAAGTCATATGATGCCAGAGTGTCTGACTTTGGCCTTGCACACCTCGTTGGCCCCTCCTCTACCCCCAACCGGGTCGCCGGCTACCGTGCACCTGAGGTGACTGATCCTCGCAGAGTGTCTCAGAAGGCAGACGTGTACAGTTTTGGTGTGTTACTATTGGAACTTCTGACTGGGAAGGCACCTACCCATGCTCTCCTGAATGAGGAAGGAGTAGACCTTCCCAGATGGGTTCAATCTGTGGTTAGAGAAGAGTGGACTTCTGAGGTCTTTGATCTTGAGCTCCTTAGGTATCAGAATGTGGAAGAGGAGATGGTTCAGTTGTTGCAACTTGCAGTTGATTGTGCAGCACAATACCCAGACAAGCGCCCTTCAATGTCTGAAGTGGTAAGGAGCATAGAAGAGTTACGAAGGTCTAGTCTTAAAGAGGACCAGGATCAAATCCAACATGATCCCGTCAATGATATAGAATTGTAG 1959 0.5472 MLPHKHTLVVVAATLALMLAATDADLAAERAALLALRSAVGGRTLFWNATRDSPCTWAGVQCERDHVVELHLPGVALSGQIPVGIFGNLTQLRTLSLRFNALRGSLPSDLAKCVNLRNLYIQRNLLSGAIPSFLFELPDLVRLNMGFNNFSGPFPTGFNSLTRLKTLFVENNQLSGPIPDLSKLSLDQFNVSYNLLNGSVPLKLRTFPQDSFLGNSLCGRPLSLCPGDIADPISVDNNSKPNSHNSHKLSAGAIAGIVVGSVVFLLLLVFLFIFLCRSKTAKKTSAVDIATVKHPEADAPVLAEKGIPDVENGGHANGNSAAAVAAVSAGNKAEVNGGGAAKKLVFFGNAARAFDLEDLLRASAEVLGKGTFGTAYKAVLEAGPVVAVKRLKDVTISEKEFKEKIEAVGAMDHESLVPLRAFYFSRDEKLLVYDYMPMGSLSALLHGNKGAGRTPLNWEVRSGIALGAARGIEYLHSRGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRRVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSEVVRSIEELRRSSLKEDQDQIQHDPVNDIEL* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0366 652 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 651 - -
Vra1g0366 652 ProSiteProfiles Protein kinase domain profile. 361 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0366 652 SUPERFAMILY Protein kinase-like (PK-like) 365 628 IPR011009 -
Vra1g0366 652 Gene3D Phosphorylase Kinase; domain 1 328 435 - -
Vra1g0366 652 CDD STKc_IRAK 367 630 - -
Vra1g0366 652 MobiDBLite consensus disorder prediction 632 652 - -
Vra1g0366 652 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515
Vra1g0366 652 Gene3D Ribonuclease Inhibitor 28 137 IPR032675 -
Vra1g0366 652 SUPERFAMILY L domain-like 47 204 - -
Vra1g0366 652 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Vra1g0366 652 PANTHER OS05G0588300 PROTEIN 4 651 - -
Vra1g0366 652 Pfam Protein kinase domain 364 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0366 652 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Vra1g0366 652 Gene3D Ribonuclease Inhibitor 139 225 IPR032675 -
Vra1g0366 652 Gene3D Transferase(Phosphotransferase) domain 1 436 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0366 Vra-Chr1 4872468 4875562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0366 25 631 Receptor kinase-like Gene Family AT1G48480 64.887 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra1g0366 Pkinase 2.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0366 - - gmx:100818955 1054.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0366 1 4872468 4875562 Vra1g0691 1 8127512 8130668 PCT