Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0348 ATGGTGAAACCAACGTATGAAAGGTTTTCAAAGGATTTTGTAATGGGAGGAGCAGCAGCAATCATATCAAAGACTGCTGCAGCACCAATTGAGAGAGTAAAGCTTTTATTGCAAAACCAAGGTGAAATGATTAAAAGAGGACAACTCAAAAAACCATACTTGGGCGTGTCTGATGGCTTTAAGAGGGTCTTCACAGAGGAGGGTTTGATTTCCTTTTGGAGAGGTCACCAGGCCAATGTTATCCGATACTTTCCCACACAGGCTTTCAATTTTGCATTCAAAGGTTACTTCAAAAGCATTTTTGGGTATTCCAAAGAGAGAGACGGGTACATTAAGTGGTTTACTGGGAATGTGGCTTCAGGCAGTGCTGCAGGAGCAACAACTTCACTTCTACTGTATCATTTAGATTATGCACGTACACGATTGGGCACTGATGCAATAGAGTGCCGCAATACCAGTCAACGCCAGTTTAAAGGACTAATTGATGTATATAGGAAGACCTTATCAAGTGATGGAATTGCTGGATTGTACAGGGGATTTGGCATTTCTATATGGGGAATTGCTATGTATCGAGGGATGTACTTTGGGATCTATGACACCATGAAGCCTATTGTTTTAGTGGGGCCATTTGAGGGGAACTTTCTTGCTAGTTTCTTCTTAGGGTGGAGCATCACAACTTTTTCAGGGGTTTGTGCATACCCTTTTGATACATTGCGCAGGAGAATGATGCTTACCTCTGGACATCCAAACAAGTACCGTAATTCAATACATGCATTTCGTGATATTGTTGGACAAGAGGGTTTCTTAGCTCTATTTCGAGGAGTTACAGCAAACATGCTTCTTGGTATCGCAGGAGCTGGGGTGCTTGCTGGATATGATCAGCTGAATAGCATCTCATCCAGACATAGTCACTATAACGAGACAAATCAAAGAGTTTTGAAATGA 945 0.419 MVKPTYERFSKDFVMGGAAAIISKTAAAPIERVKLLLQNQGEMIKRGQLKKPYLGVSDGFKRVFTEEGLISFWRGHQANVIRYFPTQAFNFAFKGYFKSIFGYSKERDGYIKWFTGNVASGSAAGATTSLLLYHLDYARTRLGTDAIECRNTSQRQFKGLIDVYRKTLSSDGIAGLYRGFGISIWGIAMYRGMYFGIYDTMKPIVLVGPFEGNFLASFFLGWSITTFSGVCAYPFDTLRRRMMLTSGHPNKYRNSIHAFRDIVGQEGFLALFRGVTANMLLGIAGAGVLAGYDQLNSISSRHSHYNETNQRVLK* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0348 314 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 6 310 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vra1g0348 314 Gene3D Mitochondrial carrier domain 4 303 IPR023395 -
Vra1g0348 314 Pfam Mitochondrial carrier protein 213 297 IPR018108 -
Vra1g0348 314 Pfam Mitochondrial carrier protein 9 102 IPR018108 -
Vra1g0348 314 Pfam Mitochondrial carrier protein 113 204 IPR018108 -
Vra1g0348 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 7 100 IPR018108 -
Vra1g0348 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 112 204 IPR018108 -
Vra1g0348 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 298 IPR018108 -
Vra1g0348 314 PANTHER ADP,ATP CARRIER PROTEIN ER-ANT1 6 310 - -
Vra1g0348 314 PRINTS Adenine nucleotide translocator signature 9 21 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vra1g0348 314 PRINTS Adenine nucleotide translocator signature 53 74 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vra1g0348 314 PRINTS Adenine nucleotide translocator signature 86 98 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vra1g0348 314 PRINTS Adenine nucleotide translocator signature 112 125 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vra1g0348 314 PRINTS Adenine nucleotide translocator signature 217 233 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vra1g0348 314 SUPERFAMILY Mitochondrial carrier 8 295 IPR023395 -
Vra1g0348 314 PRINTS Mitochondrial carrier protein signature 12 25 IPR002067 GO:0055085
Vra1g0348 314 PRINTS Mitochondrial carrier protein signature 25 39 IPR002067 GO:0055085
Vra1g0348 314 PRINTS Mitochondrial carrier protein signature 75 95 IPR002067 GO:0055085
Vra1g0348 314 PRINTS Mitochondrial carrier protein signature 127 145 IPR002067 GO:0055085
Vra1g0348 314 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Vra1g0348 314 PRINTS Mitochondrial carrier protein signature 221 243 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0348 Vra-Chr1 4757568 4760748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0348 7 302 Antiporters AT5G17400 78.041 1.58e-167 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0348 K05863 - gmx:100798418 578.556