Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0345 ATGTGGATGGTTGGTTACAACGAAGCTGCCGACTTCACCATGCCTGATTATGCACTCAATGGAAGAAAACTCAGGCCTCTCATGCCAAGGCCTGTCTCTTCTCCTAACAACACTCCAAACGCTAACTCTCCATGCTTGACCCGCATTCATCATGGCAATGATTTCTTCTCACAATATCACAATCTCGCATCAGTCGCAGATCAGGGCAAGAGAGAGTTCAACCCTCCACCTGTAGTGGTGAGTTCGAGGTGGAATCCGACCCCGGAGCAGCTGAGGGCATTGGAGGAATTGTACAGAAGAGGGACAAGAACACCGTCGGCGGAGCAAATCCAACAAATCACGGCACAGCTTCGAAGGTTTGGAAAAATTGAGGGGAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCGAGGGAAAGACAGAAACGCCGCCGTCAAATGGAGTCAGCGGCCGAGGGTCATCACACCCGTGACTTTGATGGTACTCTTGAGAAGAAAGACTTAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACGCTTGCAAAGGAATCTGTTTCAATACAAAGAGCAGCAAAAGCAGCGGTTGCAGATTGTAGAACAGATGGATGGCTCCAATTCGATGAAGGAGAGTTACAACACACAAGAAACTTAATGGAGAGGAATGCCACGTGGCATATGATGCAGTTATCTTGTCCTTCCCCTACCACAGTTTCACCCCACTTCATAAACGCACCTCCCACCATATCTACTGCTAGCATGGCCACCACACCCTCGATAACAGCAAGAGTAATGGACCCAAAGCTCATTAAGACTCATGATCTCAGCTTCTTCATTTCACCTAACAGAGAAAACGGTGTTATCCACTTAAGCAGTATCAACACCTACACCACCCCAGATGATAATTCCGTGGAGTCTCAAACCCTTCAACTTTTCCCGGTGAGGAATGTGGATGAAAGCAGTGATAACATCAACCACCAAAAAGAGACAGAGGTATCGGTCTCAGCAATGAATGCCCCAAGCCAGTTTTTTGAGTTCCTTCCATTGAAGAACTGA 1089 0.472 MWMVGYNEAADFTMPDYALNGRKLRPLMPRPVSSPNNTPNANSPCLTRIHHGNDFFSQYHNLASVADQGKREFNPPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAAEGHHTRDFDGTLEKKDLGASRTVFEVEQTKNWAPSTNCSTLAKESVSIQRAAKAAVADCRTDGWLQFDEGELQHTRNLMERNATWHMMQLSCPSPTTVSPHFINAPPTISTASMATTPSITARVMDPKLIKTHDLSFFISPNRENGVIHLSSINTYTTPDDNSVESQTLQLFPVRNVDESSDNINHQKETEVSVSAMNAPSQFFEFLPLKN* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0345 362 PANTHER WUSCHEL, PUTATIVE-RELATED 265 362 - -
Vra1g0345 362 PANTHER WUSCHEL, PUTATIVE-RELATED 63 255 - -
Vra1g0345 362 SUPERFAMILY Homeodomain-like 82 148 IPR009057 -
Vra1g0345 362 SMART HOX_1 79 146 IPR001356 GO:0003677
Vra1g0345 362 MobiDBLite consensus disorder prediction 140 161 - -
Vra1g0345 362 CDD homeodomain 83 143 IPR001356 GO:0003677
Vra1g0345 362 MobiDBLite consensus disorder prediction 143 161 - -
Vra1g0345 362 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 63 255 IPR044555 GO:0003700|GO:0099402
Vra1g0345 362 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 265 362 IPR044555 GO:0003700|GO:0099402
Vra1g0345 362 Gene3D - 80 142 - -
Vra1g0345 362 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677
Vra1g0345 362 Coils Coil 361 362 - -
Vra1g0345 362 Pfam Homeodomain 82 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0345 Vra-Chr1 4743672 4747264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0345 1 362 Wox Gene Family AT3G18010 38.442 6.22e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vra1g0345 Homeodomain 9.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0345 - - gmx:100777274 657.907