Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0339 ATGGCTTCGAGATTCTGGACCCAGGGTGGAAGTGATTCCGAGGAGGAGGAGAGCGATTATGATGAGGAGGTCGAAACGGCGGTTGGGGATTCTGCCAATCAAGCAGTGACAAGCAGGTACCTGCAGGACAATGCAAGTGACAGTGATGACTCCGATGGCCAAAAACGTGTTGTCAGGTCGGCAAAAGACAAGCGTTTCGAGGAGATGGTTTCCACTGTCGACCAGATGAAGAATGCCATGAAGATCAACGACTGGGTGAGCTTGCTAGAGAATTTTGACAAGATTAACAAACAGCTTGAGAAAGTCATGCGCATCACTGAGTCGGTGAAGGTCCCCAACCTTTACATCAAGGCACTTGTGATGTTGGAAGATTTCTTGGCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAAATGAGTAGTAGCAATGCTAAAGCCTTGAACTCAATGAAGCAGAAGCTAAAGAAAAATAACAAGCAGTACGAGGAGTTGATTAATAAGTGCAGGGAGAACCCTGAGAGTGAGGAGGAGAAAGAGGAAGAGGAGAGTGAGGAAGATTATGAAAGTGATGATGAGATTATTGAGCCAGAGCAGCTTCGAAAACCAGAAGCCAAATCGGATTCTGAAGCTTCTCAATATGACGATGAGAAGCCAGATGAAGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACAGACTTTTAGATAGACAGTTCATGAAAAACCCTAGTGAGATCACATGGGACGCTGTTAACAAGAAGTTTAAAGAGGTTGTGTCTGCTAGAGGAAGGAAGGGAACTGGGAGNTTTGAACAGGTTGAGCANCTCACTTTCCTAACAAAAGTTGCTAAGACACNTGCANAGAAGCTGGAAATTCTGTTCAGTGTGGTTTCTGCTCAGTTCGATGTTAATCCAGGTCTGAATGGATACATGCCAATAAATGTATGGAAAAAATGTGTGCAGAACATGCTGATCATTCTTGATATTTTAGTCCANTACCCAAACATAGTGGTCGATGATTCTGTGGAACCAGATGAGAATGAAACTCAGAAAGGTACTGACTATAATGGAACAATTCGGGTTTGGGGTAACTTAGTTGCTTTCTTAGAAAGAATTGATGTTGAGTTTTTCAAGAGCTTGCAATGCATAGATCCTCATACACGTGACTATGTGGAGAGACTTAGGGATGAACCCACGTTTCTGGTTCTTGCTCAGAATGTCCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCCGCGTCTAAGGTGGCTTTGAGGAGGGTTGAGCTCATTTACTACAAGCCACAGGAGGTCTATGATGCCATGAGAAAATTGACTGAGTTGACAGAAGCTGGGGAGAACGGAGGGGAGGGAAGTGAGGAGTCTAAAGAATTTGAACCAAGAGTTCCAACTGCATTTGTTGCTACCCCAGAGGTTGTGGCACGAAAACCCACCTTCCCTGAGTATAACAGGACCTTGATGGATCTATTGGTATCTTTGATATACAAATATGGAGATGAGCGAACTAAAGCACGAGCAATGCTCTGTGATATATATCAGCATGCACTTCTTGATGAATTCTCAGTTGCCCGTGATCTCCTGCTTATGAGCCATTTGCAAGATAGTGTTCAGCATTTAGACATTTCAACGCAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTTTATGTGCTTTTCGGGTTGGACTGATTTCTGAAGCACATGGCTGTCTGTCTGAACTCTACTCTGGTGGAAGGGTGAAGGAGTTGCTGGCACAAGGTGTGTCACAAAGTCGTTATCACGAGAAGACTCCAGAGCAGGAAAGGTTGGAAAGGAGACGACAGATGCCATATCATATGCACATCAATCTTGAGCTACTGGAGGCCGTACATCTTGTATCTGCTATGTTGCTGGAAGTTCCCAACTTGGCAGCCAATGTTCATGATGCCAAACGGAAGGTCATTAGTAAAACTTTCCGTCGCTTGCTTGAAGTAAGCGAGAAACAAACATTTACTGGTCCACCGGAAAATGTGAGAGACCATGTTATGGCTGCTACAAGGGTTCTTCGCAAGGGAGACTTCCAGAAGGCGTATGACATTATTGTGACTCTTGATGTATGGAAATTTGTGAAAAATCGAGACAGTGTGCTTGAAATGCTGAAGGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTTACCTTCTCTTCGTCTTATGAATCATTGTGCATAGATCAGCTCACAAAATTTTTTGATCTCTCTGTTTCTCGTACTCACAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTTATGCAAGCTGGGACCAGCCAACCGAATGCATTCTTTTCCAAGATGTCGAACACTCTAGGCTGCAGGCATTGGCATTCCAGTTGACCGAGAAGTTATCTATTCTTGCGGAGAATAATGAAAAAGCAACAGAAGCAAGGATAGGTGGTAGTGGACTAGATCTGCCTCTAAGGCGGAGAGATGGCCAGGACTATGCCGCCGCCGCAGCTGGTAGTGGAACAACATCTTCAGGTGGTAGATGGCAAGACCTGTCCCTTTCTCAGCCAAGATCAGGCAGTGGGCGTGCTGGATATGGTGGTGGTGGTGGAAGACCAATGGCATTAGGCCAAGCAGCTGGGAGTGGCTATTCAAGGGGACGAGGAACAGGTGCTTCATATGGAGGTTCAGGGAGGCCTGCGCAAAGGAGTTCAGGACTAAGGGGATCCCATGGCGATGTGTCTACTCGCATGGTTAGCCTCAAGGGGGCAGCTCGTGCTTGA 2790 0.4534 MASRFWTQGGSDSEEEESDYDEEVETAVGDSANQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFEEMVSTVDQMKNAMKINDWVSLLENFDKINKQLEKVMRITESVKVPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRENPESEEEKEEEESEEDYESDDEIIEPEQLRKPEAKSDSEASQYDDEKPDEGPWDQKLSKKDRLLDRQFMKNPSEITWDAVNKKFKEVVSARGRKGTGXFEQVEXLTFLTKVAKTXAXKLEILFSVVSAQFDVNPGLNGYMPINVWKKCVQNMLIILDILVXYPNIVVDDSVEPDENETQKGTDYNGTIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPTFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYDAMRKLTELTEAGENGGEGSEESKEFEPRVPTAFVATPEVVARKPTFPEYNRTLMDLLVSLIYKYGDERTKARAMLCDIYQHALLDEFSVARDLLLMSHLQDSVQHLDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNLAANVHDAKRKVISKTFRRLLEVSEKQTFTGPPENVRDHVMAATRVLRKGDFQKAYDIIVTLDVWKFVKNRDSVLEMLKDKIKEEALRTYLFTFSSSYESLCIDQLTKFFDLSVSRTHSIVSRMMINEELYASWDQPTECILFQDVEHSRLQALAFQLTEKLSILAENNEKATEARIGGSGLDLPLRRRDGQDYAAAAAGSGTTSSGGRWQDLSLSQPRSGSGRAGYGGGGGRPMALGQAAGSGYSRGRGTGASYGGSGRPAQRSSGLRGSHGDVSTRMVSLKGAARA* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0339 929 MobiDBLite consensus disorder prediction 194 228 - -
Vra1g0339 929 ProSiteProfiles PCI domain profile. 617 789 IPR000717 -
Vra1g0339 929 MobiDBLite consensus disorder prediction 839 862 - -
Vra1g0339 929 Pfam PCI domain 657 785 IPR000717 -
Vra1g0339 929 MobiDBLite consensus disorder prediction 175 193 - -
Vra1g0339 929 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 649 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vra1g0339 929 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 867 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vra1g0339 929 MobiDBLite consensus disorder prediction 12 26 - -
Vra1g0339 929 MobiDBLite consensus disorder prediction 1 55 - -
Vra1g0339 929 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 928 - -
Vra1g0339 929 SUPERFAMILY "Winged helix" DNA-binding domain 714 788 IPR036390 -
Vra1g0339 929 SMART PINT_4 718 806 IPR000717 -
Vra1g0339 929 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 928 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vra1g0339 929 MobiDBLite consensus disorder prediction 155 174 - -
Vra1g0339 929 MobiDBLite consensus disorder prediction 899 913 - -
Vra1g0339 929 MobiDBLite consensus disorder prediction 834 929 - -
Vra1g0339 929 MobiDBLite consensus disorder prediction 141 228 - -
Vra1g0339 929 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 718 806 - -
Vra1g0339 929 Coils Coil 144 171 - -
Vra1g0339 929 MobiDBLite consensus disorder prediction 30 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0339 Vra-Chr1 4696933 4701192 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0339 1 929 Eukaryotic Initiation Factors Gene Family AT3G56150 67.597 0.0 1181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0339 K03252 - gmx:100781967 1535.01