Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0337 ATGAAGAACATTCTTAAGAAGCTTCATATCATGTCTAACCAATCAGATGATGGACAGGGGGCTACTTCATCAAAGAGCACCAAGTCCAGTGACGGTTCATCTTCCACTACCCCTAAGAAGCTTTCGAATTGGTTGCATTCAGTTTCTAATAGGCAGAGTCCCAGTCCTCCGTCTCCTAATCTAGCCAGAGGAGAAAGAATGGACCCATCTGATTCAGTGAGCAGTGGTGGTTTGGATGTTGTGTCTGATTCAGCAAGGCGTGATTCGGAGTCTAGCGCGTCTAGGGATCCTGAAGTGGAAGAGGAATATCAGATACAACTGGCTTTGGAGCTGAGTGCAAAAGAGGATCCTGAGGCTGTACAGATTGAAGCTGTTAAGCAGATCAGTTTGGGATCTTGTGACCCTGATAATACACCAGCTGAAGTTGTGGCCTACCGGTATTGGAATTACAATGCTCTTGGTTATGATGACAAGATCTCAGATGGTTTCTATGATCTGTATGGGATCTTGACTGAGTCAACCTCTGCAAGAATGCCTTCTCTGGTAGATCTGCAAGGAAAATCAACCTCAGTTGATGTCACATGGGAAGCAGTCTTGGTCAATAGGGCTGCTGATTCCAACTTGTTGAAACTTGAACAAGAAGCCATGAAGATGGCTGCCAGTTCAGGAAAAGATTTTGAAGTAGTTGTAAATAGCAATTTGGTACACAAGCTTGCAATAATGGTGGCTGACTATATGGGTGGATCAGTTAAAGATCCTGAAAGCATGTCTAGAGCCTGGAGGAGTCTTAGTTACAGTCTAAAAGCCACCCTTGGCAGCATGGTTTTGCCTCTGGGTTCACTGACCATTGGATTGGCTCGGCATCGTGCATTGTTATTCAAGGTTTTAGCTGACAGTTTGGGCATTCCGTGTCGATTGGTGAAAGGACTGCAGTATATGGGTTCCGATGATGTGGCAATGAACTTTGTCAAGATTGATGATGGAAGGGAGTACATTGTGGACCTAATGGCAGCTCCTGGAGCACTTATTCCATCTGATGCTACTGCATCACACATTGAATGCGATGGATCTTCCTTTGTGGCCAGTCCTTCATCAAGAGAGCTAGATTCGTCCAATGTAGCATCATTCAGTAGCGGGGTTGGAAGTTCATCTGAAGAAACTTCAGACTGTGGAGGGAAAGAATCTGGTTTGAGTGGGTTTGCTACAGGCAAGGAAGAATTAAAGAAACCATCAAATGAATCCAAAAGTACCCCCTATGCAGAGAAGATCAGAGTGAAGGATTCTTCCGGCAGAACTAACTATCCATACTCGCATGGACGATCTCCTTCTTGGACTGAGGGCATCAGTTCCCCTGCAGCACGTAGAATGAAAGTCAAAGATGTTTCCCAATACATGATTGATGCTGCTAAGGAGAATCCTAACTTGGCTCAAAAACTTCATGACGTTTTACTTGAAAGTGGTGTTGTTGCACCTCCAAACTTATTTTCTGAAATGTATCATGGGCAGTTAGGTACTCCAACTGGGACCAATTTTCCAACTGAACAGAAAGATGAAAATAAACAACCAAGTGTGCAGCAAGAGATTAAGACTGATGACAACCTAGTTCCTGCTCGATTTTTGCCTCCTTTGCCTTACCACAAAATTCTTCGCAAAGCAACTCCTGGCAGTCATCTGGATTCTAAGCCTGTAGATGGCTTAGGAATTGGTCTTCCCCTTGATACAGGGGAAACTGCTGGACAGAACATACCATCTCAGGCAGAAGCAGCTCGGGTAAAGTATGGGAAAAATGTCCCAGTGGCAGCGGCTGCAGCTGCTGCAGCTGCTGTTGTTGCATCTTCTATGGTAGTTGCAGCGGCAAAATCAAACACTGACTCTAATCTTGAGATTCCTGTAGCAGCAGCTGCTACTGCTACTGCTGCAGCTGTTGTAGCAACCACTGCTGCTGTCAGTAAGTATGAGCAGGATAGTCGAAGTGATGGGGATACAGAGGGTGGTGGTTCTGAGTCAAAGGGTAGTGGTGATGGAGAGCCTAATCCTTTAGGAGAAAACTCGGAAGGTGAGAGAAAATCTGACAGATCAGTAAGTAATGACAGCAACAAATCTGATTCTGCACTGGATGAGGTTGCCGAGTATGACATTCCATGGGAGGAAATCAAAATGGGAGAGCGTATTGGACTAGGATCATATGGGGAAGTTTACCGTGGTGAATGGCATGGAACTGAAGTTGCCGTAAAAAAGTTCTTATATCAAGATATCTCTGGTGAATTACTTGAAGAGTTCAAAAGTGAGGTCCAAATAATGAAAAGACTGAGGCATCCAAATGTTGTTCTCTTCATGGGAGCAGTAACTCGGCCTCCAAATCTTTCAATTGTTTCTGAATTTCTTCCTAGAGGGAGTTTGTATAGATTAATTCACCGACCTAACAATCAATTAGATGAGCGAAGGCGGTTGCGGATGGCCCTTGATGCTGCCCGAGGAATGAACTATCTGCACAGCAGTACTCCAGTGATAGTGCATCGTGATTTGAAGTCCCCGAATCTTCTTGTTGACAAAAACTGGGTTGTAAAGGTATGTGATTTTGGCTTATCACGAATGAAGCATAGCACCTTCCTTTCTTCCAGATCAACTGCGGGAACAGCTGAATGGATGGCTCCAGAAGTGTTGAGAAATGAACTTTCAGATGAAAAGTGCGACGTTTTCAGCTATGGCGTCATATTGTGGGAGCTCTCTACATTGCAGCAACCCTGGGGAGGAATGAATCCAATGCAAGTTGTTGGTGCAGTGGGTTTCCAACATCGCCGTCTAGACATTCCAGATGATGTAGACCCTGCCATTGCAGATATTATCAGACAATGCTGGCAGACAGATCCAAAGCTGAGGCCAACATTTGCTGAAATCATGGCTGCTCTGAAGCCATTGCAGAGGCCAATTACTGCTTCTCAAGTGCCTAGATCAAGTGCTCAGTCATCACGAGTTGCTGAATTTCCCGCAGGATAG 2997 0.4498 MKNILKKLHIMSNQSDDGQGATSSKSTKSSDGSSSTTPKKLSNWLHSVSNRQSPSPPSPNLARGERMDPSDSVSSGGLDVVSDSARRDSESSASRDPEVEEEYQIQLALELSAKEDPEAVQIEAVKQISLGSCDPDNTPAEVVAYRYWNYNALGYDDKISDGFYDLYGILTESTSARMPSLVDLQGKSTSVDVTWEAVLVNRAADSNLLKLEQEAMKMAASSGKDFEVVVNSNLVHKLAIMVADYMGGSVKDPESMSRAWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSLGIPCRLVKGLQYMGSDDVAMNFVKIDDGREYIVDLMAAPGALIPSDATASHIECDGSSFVASPSSRELDSSNVASFSSGVGSSSEETSDCGGKESGLSGFATGKEELKKPSNESKSTPYAEKIRVKDSSGRTNYPYSHGRSPSWTEGISSPAARRMKVKDVSQYMIDAAKENPNLAQKLHDVLLESGVVAPPNLFSEMYHGQLGTPTGTNFPTEQKDENKQPSVQQEIKTDDNLVPARFLPPLPYHKILRKATPGSHLDSKPVDGLGIGLPLDTGETAGQNIPSQAEAARVKYGKNVPVAAAAAAAAAVVASSMVVAAAKSNTDSNLEIPVAAAATATAAAVVATTAAVSKYEQDSRSDGDTEGGGSESKGSGDGEPNPLGENSEGERKSDRSVSNDSNKSDSALDEVAEYDIPWEEIKMGERIGLGSYGEVYRGEWHGTEVAVKKFLYQDISGELLEEFKSEVQIMKRLRHPNVVLFMGAVTRPPNLSIVSEFLPRGSLYRLIHRPNNQLDERRRLRMALDAARGMNYLHSSTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNELSDEKCDVFSYGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDVDPAIADIIRQCWQTDPKLRPTFAEIMAALKPLQRPITASQVPRSSAQSSRVAEFPAG* 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0337 998 SMART serkin_6 718 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0337 998 MobiDBLite consensus disorder prediction 681 696 - -
Vra1g0337 998 PRINTS Tyrosine kinase catalytic domain signature 792 805 IPR001245 GO:0004672|GO:0006468
Vra1g0337 998 PRINTS Tyrosine kinase catalytic domain signature 831 849 IPR001245 GO:0004672|GO:0006468
Vra1g0337 998 PRINTS Tyrosine kinase catalytic domain signature 878 888 IPR001245 GO:0004672|GO:0006468
Vra1g0337 998 PRINTS Tyrosine kinase catalytic domain signature 897 919 IPR001245 GO:0004672|GO:0006468
Vra1g0337 998 PRINTS Tyrosine kinase catalytic domain signature 941 963 IPR001245 GO:0004672|GO:0006468
Vra1g0337 998 MobiDBLite consensus disorder prediction 371 448 - -
Vra1g0337 998 Gene3D Transferase(Phosphotransferase) domain 1 797 981 - -
Vra1g0337 998 MobiDBLite consensus disorder prediction 430 448 - -
Vra1g0337 998 MobiDBLite consensus disorder prediction 8 59 - -
Vra1g0337 998 ProSiteProfiles Protein kinase domain profile. 718 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0337 998 Gene3D Phosphorylase Kinase; domain 1 711 795 - -
Vra1g0337 998 Pfam Ethylene-responsive protein kinase Le-CTR1 140 343 - -
Vra1g0337 998 SUPERFAMILY Protein kinase-like (PK-like) 706 969 IPR011009 -
Vra1g0337 998 MobiDBLite consensus disorder prediction 371 391 - -
Vra1g0337 998 MobiDBLite consensus disorder prediction 83 101 - -
Vra1g0337 998 MobiDBLite consensus disorder prediction 1 101 - -
Vra1g0337 998 ProSitePatterns Protein kinases ATP-binding region signature. 724 746 IPR017441 GO:0005524
Vra1g0337 998 MobiDBLite consensus disorder prediction 979 998 - -
Vra1g0337 998 Pfam Protein tyrosine and serine/threonine kinase 718 970 IPR001245 GO:0004672|GO:0006468
Vra1g0337 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 837 849 IPR008271 GO:0004672|GO:0006468
Vra1g0337 998 CDD STKc_MAP3K-like 724 970 - -
Vra1g0337 998 MobiDBLite consensus disorder prediction 650 705 - -
Vra1g0337 998 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 988 - -
Vra1g0337 998 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 1 988 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0337 Vra-Chr1 4683757 4689830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0337 1 990 MAP Kinase Kinase Kinase AT1G73660 62.843 0.0 1130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vra1g0337 PK_Tyr_Ser-Thr 4.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0337 - - gmx:100778331 1613.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0337 1 4683757 4689830 Vra1g0669 1 7876250 7886695 PCT